@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1907: (2016-03-30 )
MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEMVEFSSLDVPVFGNLSEMLEEIKPDCVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRTIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTGVKTAEMMAETREFVKQGAADEVELIEGARGAEYEGMRIHSVRLPGLVAHQEVIFGAEGQGLTIRHDSYDRISFMSGVALSVRKTKELETLIYGLENILD

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_I_9(1P9L)
DAPB_MYCTU
[Raw transfer]



NAD_E_5(1P9L)
DAPB_MYCTU
[Raw transfer]



NDP_E_5(1C3V)
DAPB_MYCTU
[Raw transfer]



NDP_G_7(1C3V)
DAPB_MYCTU
[Raw transfer]



NAD_E_5(1P9L)
DAPB_MYCTU
[Raw transfer]



NDP_E_5(1DIH)
?
[Raw transfer]



PGE_A_4(4YWJ)
DAPB_PSEAE
[Raw transfer]
22 PsiBlast_CBE 86.9144% -89 - C2 -1C3V 10.5 DAPB_MYCTU
26 PsiBlast_CBE 86.8944% -93 - C2 -1YL7 - DAPB_MYCTU -
28 PsiBlast_CBE 86.8144% -90 - C2 -1YL7 - DAPB_MYCTU -
3 PsiBlast_PDB 86.5844% -87 - C2 -1YL5 - DAPB_MYCTU -
5 PsiBlast_PDB 86.4544% -90 - C2 -1YL7 - DAPB_MYCTU -
4 PsiBlast_PDB 86.4444% -93 - C2 -1YL6 - DAPB_MYCTU -
30 PsiBlast_CBE 86.3344% -86 - C2 -1YL7 - DAPB_MYCTU -
31 PsiBlast_CBE 86.2044% -93 - C2 -1YL6 - DAPB_MYCTU -
25 PsiBlast_CBE 86.1444% -89 - C2 -1YL7 - DAPB_MYCTU -
2 PsiBlast_PDB 85.9844% -83 - C2 -1P9L 10.4 DAPB_MYCTU
27 PsiBlast_CBE 85.9644% -86 - C2 -1YL7 - DAPB_MYCTU -
29 PsiBlast_CBE 85.9544% -98 - C2 -1YL7 - DAPB_MYCTU -
103 HHSearch 85.8848% -76 - C2 -1P9L 10.5 DAPB_MYCTU
1 PsiBlast_PDB 85.8144% -88 - C2 -1C3V 11.0 DAPB_MYCTU
23 PsiBlast_CBE 85.3844% -88 - C2 -1YL5 - DAPB_MYCTU -
24 PsiBlast_CBE 85.3644% -87 - C2 -1YL7 - DAPB_MYCTU -
21 PsiBlast_CBE 85.2944% -84 - C2 -1P9L 11.1 DAPB_MYCTU
7 PsiBlast_PDB 80.9430% -95 - C2 -4YWJ 1.6 DAPB_PSEAE
6 PsiBlast_PDB 77.8029% -87 - C2 -4F3Y - DAPB_BURTA -
11 PsiBlast_PDB 77.4628% -94 - C2 -1DRV - DAPB_ECOLI -
93 Fugue 36.9333% -38 - C2 -1DIH Error ?