@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1918: (2016-03-30 )
MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEIIKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFTHFGVSGPAALRCSMFVLRELKKTGAGTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKADLEETAEYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYNITCALVTGHTAGAYAAEVSNA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(2I0Z)
?
[Raw transfer]




FAD_A_3(2I0Z)
?
[Raw transfer]




FAD_A_3(2I0Z)
?
[Raw transfer]




1 PsiBlast_PDB 91.5763%-110 - C2 -2I0Z 13.3 ?
149 Fugue 91.2462%-108 - C2 -2I0Z 13.3 ?
127 HHSearch 89.5463%-105 - C2 -2I0Z 13.3 ?
21 PsiBlast_CBE 78.8345%-104 - C3 -4CNK - ? -
3 PsiBlast_PDB 78.5745%-106 - C3 -4CNK - ? -
22 PsiBlast_CBE 78.2045%-105 - C3 -4CNJ - ? -
2 PsiBlast_PDB 77.9445%-107 - C3 -4CNJ - ? -
23 PsiBlast_CBE 77.7645%-106 - C3 -4CNJ - ? -
24 PsiBlast_CBE 77.6945%-106 - C3 -4CNJ - ? -
128 HHSearch 67.6531% -92 - C2 -3V76 - ? -
4 PsiBlast_PDB 67.5030% -95 - C2 -2GQF - Y933_HAEIN -
129 HHSearch 66.5531% -91 - C2 -2GQF - Y933_HAEIN -
5 PsiBlast_PDB 62.1928% -84 - C2 -3V76 - ? -
152 Fugue 58.5422% -63 - C2 -1QJD - FRDA_SHEFR -
151 Fugue 55.7421% -56 - C2 -1JRX - FRDA_SHEFR -
130 HHSearch 53.9718% -68 - C2 -2H88 - SDHA_CHICK -
138 HHSearch 50.0920% -76 - C2 -2E5V - NADB_SULTO -
135 HHSearch 50.0922% -49 - C2 -1Y0P - FRDA_SHEFR -
134 HHSearch 50.0021% -61 - C2 -2WDQ - SDHA_ECOLI -
131 HHSearch 48.4020% -66 * C2 *2BS2 - FRDA_WOLSU -