@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1925: (2016-03-30 )
MKWKKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSPKVAALQANSNVETEIYPDGWASSLRKEVTNFYQLEEEELIFTAGVDELIELLTRVLLDTTKNTVMATPTFVQYRQNALIEGAEVREIPLLTDGAHDLEGMLNAIDEKTTIVWICNPNNPTGNYIDLADIQAFLDKVPSDILVVLDEAYIEYVTPQPKKHEKLIRTYKNLIITRTFSKIYGLASARVGYGIADKEIINQLNIVRPPFNTTSIGQKLAIEAIKDQAFIEACRISNANGIKQYEAFAKRFEQVKLYPANGNFVLIDLGIEARTIFSYLEKNGYITRSGAALGFPTAVRITIGKEEENSAVIALLEKLL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_2(1FG7)
HIS8_ECOLI
[Raw transfer]



PLP_C_3(1GEX)
HIS8_ECOLI
[Raw transfer]



PMP_A_3(1UU2)
HIS8_THEMA
[Raw transfer]



PLP_A_3(1IJI)
HIS8_ECOLI
[Raw transfer]



HSA_E_5(1GEX)
HIS8_ECOLI
[Raw transfer]



MES_A_4(4R8D)
?
[Raw transfer]



144_A_10(3CQ5)
HIS8_CORGL
[Raw transfer]
23 HHSearch 99.6594%-110 - C1 -3FFH - HIS8_LISIN -
1 PsiBlast_PDB 99.4893%-110 - C1 -3FFH - HIS8_LISIN -
24 HHSearch 70.8932% -95 - C1 -3GET - HIS8_CAMJE -
2 PsiBlast_PDB 68.3832% -87 - C1 -3GET - HIS8_CAMJE -
3 PsiBlast_PDB 65.2029% -84 - C1 -4R2N - ? -
7 PsiBlast_PDB 65.1827% -91 - C1 -1GEX 6.3 HIS8_ECOLI
43 Fugue 64.0527% -85 - C1 -1FG7 - HIS8_ECOLI -
5 PsiBlast_PDB 63.6327% -85 - C1 -1FG3 - HIS8_ECOLI -
6 PsiBlast_PDB 63.5927% -85 - C1 -1FG7 5.1 HIS8_ECOLI
4 PsiBlast_PDB 63.4329% -77 - C1 -4R5Z - ? -
8 PsiBlast_PDB 63.4027% -85 - C1 -1IJI 4.8 HIS8_ECOLI
44 Fugue 63.3326% -85 - C1 -1IJI - HIS8_ECOLI -
30 HHSearch 61.8025% -83 - C1 -3LY1 - ? -
27 HHSearch 61.4925% -83 - C1 -3HDO - HIS8_GEOMG -
29 HHSearch 61.2427% -86 - C1 -3EUC - HIS82_CUPPJ -
10 PsiBlast_PDB 60.8128% -85 - C1 -3LY1 - ? -
31 HHSearch 59.9623% -78 - C1 -3CQ5 2.9 HIS8_CORGL
28 HHSearch 59.1424% -86 - C1 -3FTB - ? -
26 HHSearch 58.8126% -87 - C1 -1FG7 - HIS8_ECOLI -
18 PsiBlast_PDB 57.5626% -85 - C1 -3FTB - ? -