@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1930: (2016-03-30 )
MKLNFLYANMQKDIDSVEKELKKALSGAAADTTSAAALHLLEAGGKRIRPMFVCLSARLAANADFNAVKNASVAIELIHMASIVHDDVVDDADLRRGRETIKSKWGNHIAMYTGDFLFAKSLEYMTEIKDVAAHKMLSHVTVELSTGEIEQLKDKYNFDQSVRNYLRRIKRKTALLIAASCGLGGVVSGQSEADYQKLYRFGYYVGMAFQITDDVLDFVGTEKELGKPAGEDLRQGNVTLPVFFAMEDPFLKKRISQITEETPAEEIAVLVEEVKKTGAKQAEDVATTYLKKAVEILDSLPQVPELKPLKQIVRVLDKRNY

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DMA_A_6(4GP2)
?
[Raw transfer]



IPE_A_4(3WJO)
?
[Raw transfer]



DMA_A_3(4GP1)
?
[Raw transfer]



CIT_A_3(3PKO)
?
[Raw transfer]



GOL_A_5(3Q2Q)
?
[Raw transfer]



GOL_A_2(3LK5)
?
[Raw transfer]



IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]



IPE_A_3(3WJO)
?
[Raw transfer]



IPE_B_7(3OYR)
?
[Raw transfer]



IPE_D_24(3Q1O)
?
[Raw transfer]



IPE_B_13(3Q1O)
?
[Raw transfer]



IPE_C_18(3Q1O)
?
[Raw transfer]



2DE_D_13(3AQC)
HEXB_MICLU
[Raw transfer]



IPE_A_7(3Q1O)
?
[Raw transfer]



2DE_B_8(3AQC)
HEXB_MICLU
[Raw transfer]



IPE_A_2(3Q2Q)
?
[Raw transfer]
55 Fugue 94.2536% -88 * C1 *3AQB - HEXB_MICLU -
22 PsiBlast_CBE 89.4936% -90 - C1 -3AQB - HEXB_MICLU -
70 HHSearch 89.1836% -86 - C1 -3AQB - HEXB_MICLU -
1 PsiBlast_PDB 88.9736% -87 - C1 -3AQB - HEXB_MICLU -
21 PsiBlast_CBE 88.6136% -90 - C1 -3AQC 4.6 HEXB_MICLU
2 PsiBlast_PDB 86.3936% -85 - C1 -3AQC 4.5 HEXB_MICLU
73 HHSearch 80.5831% -83 - C1 -1WY0 - ? -
63 Fugue 77.9931%-102 - C1 -3OYR 3.4 ?
9 PsiBlast_PDB 75.4334% -86 - C1 -1WY0 - ? -
67 HHSearch 74.1532% -95 - C1 -3OYR 3.4 ?
7 PsiBlast_PDB 73.7232% -84 - C1 -3LMD - ? -
8 PsiBlast_PDB 73.4932% -87 - C1 -3Q2Q 2.3 ?
74 HHSearch 71.0828% -81 - C1 -3NF2 - ? -
71 HHSearch 69.1431% -80 - C1 -3LMD - ? -
69 HHSearch 68.7927% -88 - C1 -3APZ - SPS3_ARATH -
82 HHSearch 67.2426% -91 - C1 -3IPI - GFPS_METMA -
31 PsiBlast_CBE 66.8832% -92 - C1 -3WJN - ? -
72 HHSearch 66.2927% -83 - C1 -3PKO - ? -
6 PsiBlast_PDB 66.2632% -89 - C1 -3WJO 3.6 ?
5 PsiBlast_PDB 64.6833% -85 - C1 -4LOB - ? -
11 PsiBlast_PDB 49.2631% -69 - C1 -3PKO 3.1 ?
23 PsiBlast_CBE 47.0838% -69 - C1 -3OYR 3.4 ?
52 PsiBlast_CBE 27.7932% -63 - C1 -3Q1O 3.7 ?
51 PsiBlast_CBE 27.2732% -65 - C1 -3Q1O 3.6 ?
53 PsiBlast_CBE 26.8532% -63 - C1 -3Q1O 4.1 ?
54 PsiBlast_CBE 25.4432% -62 - C1 -3Q1O 4.1 ?