@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1936: (2016-03-30 )
MTQKKVAILGAGSWGTGLALVLADNNHKPVIWGNLDKIVNEINESHTNSHYLPDIILPTEVKATLSLDEAIDGAEIVVIAIPTNAMRIVCKQLNEALKEPTILVHVSKGIEPETNLRMSEVIEEEIDAAKRKALVVLSGPSHAEEVALRHPTTLCASCKDLSAAEIVQDRFINNNLRIYTNDDVIGAEIGGALKNIIALGAGISDGLGYGDNAKAALMTRGMAEITRLGVAVGSNPQTFYGLTGIGDLIVTCTSVHSRNWRAGNMLGKGENLDEVLEKMGMVVEGVRTAKAVHGWAKKLDIDMPITESIYAILFENKDAREAVDLLMGREKKIEKESF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(1Z82)
?
[Raw transfer]




NDP_A_3(1Z82)
?
[Raw transfer]




G3P_B_6(1Z82)
?
[Raw transfer]




2 PsiBlast_PDB 96.1037%-108 - C1 -3K96 - GPDA_COXBU -
27 HHSearch 96.0437%-103 - C1 -3K96 - GPDA_COXBU -
21 PsiBlast_CBE 95.1737%-107 - C1 -3K96 - GPDA_COXBU -
28 HHSearch 93.1445% -99 - C1 -1Z82 10.4 ?
1 PsiBlast_PDB 91.8142% -98 - C1 -1Z82 9.7 ?
7 PsiBlast_PDB 89.9435%-109 - C1 -1M67 - GPDA_LEIME -
45 Fugue 89.2333%-102 * C1 *1EVY - GPDA_LEIME -
5 PsiBlast_PDB 89.1835%-109 - C1 -1JDJ - GPDA_LEIME -
9 PsiBlast_PDB 88.9735%-109 - C1 -1N1G - GPDA_LEIME -
6 PsiBlast_PDB 88.8535%-107 - C1 -1M66 - GPDA_LEIME -
3 PsiBlast_PDB 88.7435%-110 - C1 -1EVY - GPDA_LEIME -
4 PsiBlast_PDB 88.7335%-108 - C1 -1EVZ - GPDA_LEIME -
22 PsiBlast_CBE 88.4135%-105 - C1 -1N1E - GPDA_LEIME -
8 PsiBlast_PDB 88.3435%-104 - C1 -1N1E - GPDA_LEIME -
26 HHSearch 88.0533%-104 - C1 -1EVY - GPDA_LEIME -
29 HHSearch 87.1430% -99 - C1 -1X0V - GPDA_HUMAN -
10 PsiBlast_PDB 83.5830% -95 - C1 -1WPQ - GPDA_HUMAN -
13 PsiBlast_PDB 83.4429%-106 - C1 -4FGW - GPD1_YEAST -
14 PsiBlast_PDB 82.8729%-102 - C1 -2PLA - GPD1L_HUMAN -
11 PsiBlast_PDB 82.7130% -96 - C1 -1X0X - GPDA_HUMAN -