@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1939: (2016-03-30 )
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIRFEPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]




C5P_H_8(2H92)
KCY_STAAW
[Raw transfer]




C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]




C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]




CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]




C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]




C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]




CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]




C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]




C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]




CDP_A_2(3AKD)
KCY_THET8
[Raw transfer]




C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]




DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]




DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]




DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]




C5P_C_9(4DIE)
?
[Raw transfer]




C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]




C5P_B_7(4DIE)
?
[Raw transfer]




C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]




C5P_A_5(4DIE)
?
[Raw transfer]




C5P_D_11(4DIE)
?
[Raw transfer]




ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




1 PsiBlast_PDB 95.4659%-107 - C1 -1Q3T - KCY_STRPN -
71 HHSearch 93.9259%-106 - C1 -1Q3T - KCY_STRPN -
85 Fugue 86.9340%-111 - C1 -1CKE - KCY_ECOLI -
65 HHSearch 86.7941%-111 - C1 -1CKE - KCY_ECOLI -
13 PsiBlast_PDB 86.4742%-115 - C1 -2FEM - KCY_ECOLI -
28 PsiBlast_CBE 85.9142% -99 - C1 -1KDP 6.1 KCY_ECOLI
11 PsiBlast_PDB 85.6942%-105 - C1 -1KDT 6.0 KCY_ECOLI
12 PsiBlast_PDB 85.5741%-112 - C1 -4E22 - KCY_YERPY -
6 PsiBlast_PDB 85.5742%-112 - C1 -1CKE - KCY_ECOLI -
5 PsiBlast_PDB 85.0243%-108 - C1 -3R20 3.0 ?
8 PsiBlast_PDB 84.3342%-102 - C1 -1KDO 8.3 KCY_ECOLI
66 HHSearch 84.2841%-108 * C1 *3R20 3.0 ?
7 PsiBlast_PDB 84.1142%-103 - C1 -2CMK 5.7 KCY_ECOLI
29 PsiBlast_CBE 83.9142%-107 - C1 -1KDO 8.3 KCY_ECOLI
26 PsiBlast_CBE 83.5942%-102 - C1 -1KDT 4.9 KCY_ECOLI
67 HHSearch 82.6450% -95 - C1 -2H92 8.0 KCY_STAAW
9 PsiBlast_PDB 82.6142% -99 - C1 -1KDP 7.7 KCY_ECOLI
21 PsiBlast_CBE 82.5550%-102 - C1 -2H92 8.9 KCY_STAAW
24 PsiBlast_CBE 82.4242%-106 - C1 -4DIE 5.5 ?
4 PsiBlast_PDB 82.2042%-115 - C1 -4DIE 5.2 ?
2 PsiBlast_PDB 81.4950%-101 - C1 -2H92 8.0 KCY_STAAW
10 PsiBlast_PDB 81.0242% -96 - C1 -1KDR 5.3 KCY_ECOLI
22 PsiBlast_CBE 80.9650%-102 - C1 -2H92 8.0 KCY_STAAW
27 PsiBlast_CBE 80.2242% -93 - C1 -1KDR 5.1 KCY_ECOLI
23 PsiBlast_CBE 79.9742%-113 - C1 -4DIE 5.5 ?
25 PsiBlast_CBE 79.9142%-111 - C1 -4DIE 6.0 ?
14 PsiBlast_PDB 77.6442%-100 - C1 -2FEO 4.3 KCY_ECOLI
68 HHSearch 76.9434%-101 - C1 -3AKE 6.7 KCY_THET8
17 PsiBlast_PDB 71.6833% -96 - C1 -3AKE 6.7 KCY_THET8
16 PsiBlast_PDB 70.0433% -98 - C1 -3AKD 7.7 KCY_THET8
15 PsiBlast_PDB 66.8033% -87 - C1 -3AKC 7.4 KCY_THET8