@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1940: (2016-03-30 )
MAKVALITTGGTIASKKTASGKLASGELSGEELAALCQLPTEIQIDIYSTFQLPSMHITLPDLISLKQLIESIFMDETYDGIVVTHGTDSLEETAYFLDLAVTDARPIVVTGSQRAPEEPGTDAYVNIRHAIYTACEINLRQAGTVVVFNERIFAARYVKKVHASNIQGFSAFGFGYLGIIDNDQVFLYQKPLEHECFDIRLDLPEVVVIKCYIGADGLFIDAAIDSGVSGIVLEGVGRGQVAPKMMPAIIRALDAGIPVVITTSAEEGNVYTTYDYEGSTFDLYNRGVILGKDYDSKKARMKLMVLLASQEEINQTNFR

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_A_2(2WLT)
ASPG_HELPJ
[Raw transfer]



ASP_A_2(2WT4)
ASPG_HELPJ
[Raw transfer]



GLU_A_5(1HFW)
ASPG_DICCH
[Raw transfer]



ASP_F_6(3ECA)
ASPG2_ECOLI
[Raw transfer]



ASP_E_5(1HO3)
ASPG2_ECOLI
[Raw transfer]



ASP_E_5(1NNS)
ASPG2_ECOLI
[Raw transfer]



ASP_G_7(1NNS)
ASPG2_ECOLI
[Raw transfer]



ASP_G_7(1HO3)
ASPG2_ECOLI
[Raw transfer]
62 HHSearch 94.6529%-122 - C8 -3NXK - ? -
20 PsiBlast_PDB 92.2328%-123 - C8 -3NXK - ? -
60 HHSearch 91.0428%-116 - C8 -2WLT - ASPG_HELPJ -
10 PsiBlast_PDB 89.5328%-124 - C8 -2WLT 3.3 ASPG_HELPJ
57 HHSearch 88.4228%-119 * C8 *1NNS - ASPG2_ECOLI -
23 PsiBlast_CBE 88.0332%-132 - C8 -2JK0 - ? -
38 PsiBlast_CBE 88.0132%-126 - C8 -2GVN - ? -
37 PsiBlast_CBE 87.9832%-127 - C8 -2GVN - ? -
39 PsiBlast_CBE 87.9032%-127 - C8 -2GVN - ? -
1 PsiBlast_PDB 87.8432%-128 - C8 -2JK0 - ? -
42 PsiBlast_CBE 87.7932%-127 - C8 -2GVN - ? -
41 PsiBlast_CBE 87.7732%-127 - C8 -2GVN - ? -
40 PsiBlast_CBE 87.7432%-128 - C8 -2GVN - ? -
7 PsiBlast_PDB 87.7030%-116 - C8 -1JSL - ASPG_DICCH -
3 PsiBlast_PDB 87.6632%-127 - C8 -2GVN - ? -
43 PsiBlast_CBE 87.5332%-128 - C8 -2GVN - ? -
11 PsiBlast_PDB 87.4028%-131 - C8 -2WT4 4.5 ASPG_HELPJ
6 PsiBlast_PDB 87.3430%-116 - C8 -1HG0 - ASPG_DICCH -
8 PsiBlast_PDB 87.2630%-116 - C8 -1JSR - ASPG_DICCH -
5 PsiBlast_PDB 86.7330%-117 - C8 -1HFJ - ASPG_DICCH -
9 PsiBlast_PDB 85.6130%-136 - C8 -1HFW 3.1 ASPG_DICCH
46 PsiBlast_CBE 76.2031%-121 - C8 -3ECA 3.4 ASPG2_ECOLI
48 PsiBlast_CBE 75.8931%-123 - C8 -1HO3 3.1 ASPG2_ECOLI
14 PsiBlast_PDB 75.5431%-123 - C8 -1HO3 3.3 ASPG2_ECOLI
47 PsiBlast_CBE 74.7531%-120 - C8 -1NNS 3.7 ASPG2_ECOLI
13 PsiBlast_PDB 74.0631%-122 - C8 -1NNS 3.4 ASPG2_ECOLI