Study : Lmo1946 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

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Binding Site Number :C3_S1
Best Complexes choosen after comparative docking [pKd > 3] : 5 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C3_S1
Complex: CIT_A_8(3BJK) / Model_10(3BJK/A) = [4.0] Download146.10-9.67MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW
Complex: COA_C_6(1VPM) / Model_17(1VPM/C) = [5.0] Download1769.2910.16MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW
Complex: COA_A_8(1Y7U) / Model_25(1Y7U/A) = [5.2] Download1066.7415.78MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW
Complex: COA_A_8(1Y7U) / Model_1(1Y7U/A) = [5.3] Download1401.9015.78MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW
Complex: COA_A_5(1VPM) / Model_3(1VPM/A) = [5.4] Download1491.2813.00MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW
Consensus
[pKd Mean = 4.98]
-1175
(s=561)
9
(s=9)
MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW