@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1946: (2016-03-30 )
MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_A_8(1Y7U)
?
[Raw transfer]




COA_A_8(1Y7U)
?
[Raw transfer]




COA_C_6(1VPM)
?
[Raw transfer]




COA_A_5(1VPM)
?
[Raw transfer]




COA_A_5(1VPM)
?
[Raw transfer]




COA_B_9(4IEN)
?
[Raw transfer]




COA_C_11(4IEN)
?
[Raw transfer]




COA_D_15(4IEN)
?
[Raw transfer]




COA_A_5(4IEN)
?
[Raw transfer]




CIT_A_8(3BJK)
Y827_HAEIN
[Raw transfer]




1 PsiBlast_PDB 92.5752% -84 - C3 -1Y7U 5.3 ?
25 HHSearch 91.7252% -82 - C3 -1Y7U 5.2 ?
4 PsiBlast_PDB 86.0243% -76 - C3 -4NCP - ? -
27 HHSearch 82.6346% -88 - C3 -1VPM 5.4 ?
18 PsiBlast_CBE 80.9945% -80 - C3 -1VPM - ? -
3 PsiBlast_PDB 80.2045% -82 - C3 -1VPM 5.4 ?
2 PsiBlast_PDB 78.8145% -82 - C3 -3SPS - ? -
17 PsiBlast_CBE 77.5945% -76 - C3 -1VPM 5.0 ?
8 PsiBlast_PDB 76.0033% -92 - C3 -4IEN 6.4 ?
21 PsiBlast_CBE 75.9033% -88 - C3 -4IEN 6.5 ?
23 PsiBlast_CBE 75.4533% -91 - C3 -4IEN 6.2 ?
19 PsiBlast_CBE 75.3139%-103 - C3 -4ZV3 - BACH_MOUSE -
20 PsiBlast_CBE 75.0339%-110 - C3 -4ZV3 - BACH_MOUSE -
28 HHSearch 74.7233% -85 - C3 -2QQ2 - BACH_HUMAN -
5 PsiBlast_PDB 74.5839%-109 - C3 -4ZV3 - BACH_MOUSE -
9 PsiBlast_PDB 72.9731% -96 - C3 -1YLI - Y827_HAEIN -
7 PsiBlast_PDB 72.4237%-110 - C3 -2EIS - ? -
22 PsiBlast_CBE 72.1133% -88 - C3 -4IEN 6.1 ?
31 HHSearch 71.4735%-109 - C3 -2EIS - ? -
24 PsiBlast_CBE 71.3631% -94 - C3 -1YLI - Y827_HAEIN -
10 PsiBlast_PDB 69.7530%-103 - C3 -3BJK 4.0 Y827_HAEIN