@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1947: (2016-03-30 )
MKIWNSIVGKIWSTIILLLIGILVISGFLVAMIYEKNNITRITNELEDKTASIITVMQENNEVISAENNNDSALILLDDTMGVIIEQNGKSVYQSQSPDTISSASANKLIQDKTLDKALEKDNSVTMKYNFKTEKSSLPVEISAQKFKLANGETGVVYVYQSYHDILKVNEKTMSTLIISGIIAIVITSILSFVFSSRMAFPLREMKKIAIAVSKGNFDNRVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLHNWFFSPENTEKVLIPVALNELLNDTLEKKESQVGEITFADHTYVAILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDVARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPLYK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4KP4)
ENVZ_ECOLI
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



ADP_B_8(3DGE)
?
[Raw transfer]



ADP_B_13(4JAV)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]
3 PsiBlast_PDB 80.1535% -80 - C2 -4U7O 8.5 ?
22 PsiBlast_CBE 79.1636% -75 - C2 -4JAV 5.4 ?
8 PsiBlast_PDB 79.0236% -86 - C2 -4JAU 5.2 ?
7 PsiBlast_PDB 78.5136% -80 - C2 -4JAS 7.6 ?
39 HHSearch 78.0437% -91 - C2 -2C2A 5.5 ?
5 PsiBlast_PDB 76.4636% -72 - C2 -4JAV 6.1 ?
4 PsiBlast_PDB 75.6136% -72 - C2 -3DGE 6.4 ?
1 PsiBlast_PDB 74.7331% -62 - C2 -4I5S - ? -
23 PsiBlast_CBE 74.5236% -70 - C2 -3DGE 7.3 ?
6 PsiBlast_PDB 73.9636% -82 - C2 -2C2A 5.5 ?
21 PsiBlast_CBE 73.6335% -69 - C2 -4U7O 8.7 ?
2 PsiBlast_PDB 72.5735% -82 - C2 -4U7N - ? -
59 Fugue 72.0428% -54 - C2 -4I5S - ? -
9 PsiBlast_PDB 69.0032% -80 - C2 -4Q20 - DIVL_CAUCR -
37 HHSearch 64.2325% -71 - C2 -3A0R - ? -
16 PsiBlast_PDB 62.5328% -62 - C2 -4CB0 5.7 CPXA_ECOLI
41 HHSearch 62.1720% -80 - C2 -2Q8G - PDK1_HUMAN -
12 PsiBlast_PDB 61.9028% -67 - C2 -4BIX - CPXA_ECOLI -
44 HHSearch 61.3532% -82 - C2 -3A0Y - ? -
11 PsiBlast_PDB 61.0028% -61 - C2 -4BIW - CPXA_ECOLI -
46 HHSearch 57.1237% -78 - C2 -3SL2 7.3
14 PsiBlast_PDB 54.2142% -63 - C2 -3SL2 7.3