@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1948: (2016-03-30 )
MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIEVCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPED

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_8(3FFX)
CHEY_ECOLI
[Raw transfer]




PG4_A_4(3A0U)
?
[Raw transfer]




GOL_A_4(2GWR)
MTRA_MYCTU
[Raw transfer]




GOL_A_6(3MYY)
CHEY_ECOLI
[Raw transfer]




GOL_B_13(3OO0)
CHEY_ECOLI
[Raw transfer]




GOL_A_6(3OO0)
CHEY_ECOLI
[Raw transfer]




GOL_B_15(3MYY)
CHEY_ECOLI
[Raw transfer]




101 HHSearch 86.4443%-106 - C5 -2GWR 2.4 MTRA_MYCTU
23 PsiBlast_CBE 85.9636%-113 - C5 -4KNY - KDPE_ECOLI -
102 HHSearch 85.3738%-108 - C6 -1YS7 - PRRA_MYCTU -
107 HHSearch 85.0037%-114 - C5 -1KGS - ? -
7 PsiBlast_PDB 84.0036%-122 - C5 -1KGS - ? -
2 PsiBlast_PDB 82.5940% -92 - C5 -2GWR - MTRA_MYCTU -
5 PsiBlast_PDB 82.0536%-103 - C5 -4KFC - KDPE_ECOLI -
6 PsiBlast_PDB 81.8936%-107 - C5 -4KNY - KDPE_ECOLI -
105 HHSearch 78.5740% -90 - C6 -2OQR - REGX3_MYCTU -
1 PsiBlast_PDB 77.8940% -89 - C6 -2OQR - REGX3_MYCTU -
4 PsiBlast_PDB 76.6137%-103 - C6 -1YS7 - PRRA_MYCTU -
3 PsiBlast_PDB 76.3037%-102 - C6 -1YS6 - PRRA_MYCTU -
22 PsiBlast_CBE 74.4337% -90 - C6 -1YS6 - PRRA_MYCTU -
21 PsiBlast_CBE 73.7337% -89 - C6 -1YS7 - PRRA_MYCTU -
14 PsiBlast_PDB 70.4550%-128 - C5 -1B00 - PHOB_ECOLI -
8 PsiBlast_PDB 69.2255%-110 - C5 -1MVO - PHOP_BACSU -
31 PsiBlast_CBE 68.4650%-129 - C5 -2JBA - PHOB_ECOLI -
32 PsiBlast_CBE 68.0749%-128 - C5 -2JBA - PHOB_ECOLI -
27 PsiBlast_CBE 68.0050%-133 - C5 -2IYN - PHOB_ECOLI -
15 PsiBlast_PDB 67.7950%-135 - C5 -2IYN - PHOB_ECOLI -
80 PsiBlast_CBE 60.5840%-104 - C5 -3A0U 1.4 ?
81 PsiBlast_CBE 58.5433% -99 - C5 -3MYY 2.7 CHEY_ECOLI
82 PsiBlast_CBE 58.5233%-100 - C5 -3MYY 2.7 CHEY_ECOLI
86 PsiBlast_CBE 58.4533%-102 - C5 -3OO0 3.1 CHEY_ECOLI
88 PsiBlast_CBE 58.4433%-101 - C5 -3FFX 2.8 CHEY_ECOLI
85 PsiBlast_CBE 58.0633%-100 - C5 -3OO0 2.9 CHEY_ECOLI