@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1970: (2016-03-30 )
MEKKIRTVLGDISKESLGFTYSHEHLWCCPPSVQKDRDFELTDYESSLEELKTFQSIGGQTLVDASTLDYGRDGNKLKTMSEESGVNVLGVTGFNKHIYFPDWVQEESIEQITDRLIYDIEKGMDGSDARAGILKSGSWYNLIHPLENKVTRAVAWAQKETGAPIWLHTEAGTMGQEMLAILEEEGVNMELVAVGHSDRNADPYYHLKLAEKGAYVQFDGCGKVKYYPDSTRVELVKNMLENGFGDKLLISGDMGRKSYLHAYGGGPGFRFIKTKFIPRLLEEGVTEQQIQTIFYDNPANWLAKF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CO2_A_4(2D2H)
?
[Raw transfer]




TZZ_A_5(2D2H)
?
[Raw transfer]




FMT_A_9(1PSC)
OPD_BREDI
[Raw transfer]




FMT_A_11(1DPM)
OPD_BREDI
[Raw transfer]




CO2_A_6(2D2J)
?
[Raw transfer]




EDO_A_10(1I0D)
OPD_BREDI
[Raw transfer]




EDO_A_10(1HZY)
OPD_BREDI
[Raw transfer]




30 HHSearch 92.7330% -59 - C3 -3K2G - ? -
25 PsiBlast_CBE 92.5232% -65 - C3 -4LEF - PHP_ECOLI -
26 PsiBlast_CBE 92.2032% -65 - C3 -4LEF - PHP_ECOLI -
27 PsiBlast_CBE 92.0132% -64 - C3 -4LEF - PHP_ECOLI -
10 PsiBlast_PDB 91.7029% -61 - C3 -1I0D 3.0 OPD_BREDI
1 PsiBlast_PDB 91.6832% -61 - C3 -4LEF - PHP_ECOLI -
8 PsiBlast_PDB 91.5429% -62 - C3 -1HZY 2.7 OPD_BREDI
31 HHSearch 91.3833% -67 - C3 -1BF6 - PHP_ECOLI -
17 PsiBlast_PDB 91.3828% -56 - C3 -4ZST - ? -
2 PsiBlast_PDB 91.2832% -68 - C3 -1BF6 - PHP_ECOLI -
53 Fugue 91.2331% -69 - C3 -1BF6 - PHP_ECOLI -
3 PsiBlast_PDB 91.2234% -56 - C3 -3MSR - ? -
4 PsiBlast_PDB 91.2128% -61 - C3 -3K2G - ? -
9 PsiBlast_PDB 91.0529% -62 - C3 -1I0B - OPD_BREDI -
28 PsiBlast_CBE 90.8032% -68 - C3 -1BF6 - PHP_ECOLI -
6 PsiBlast_PDB 90.7729% -60 - C3 -1PSC 2.5 OPD_BREDI
15 PsiBlast_PDB 90.5529% -66 - C3 -4E3T - OPD_BREDI -
11 PsiBlast_PDB 90.4329% -65 - C3 -1PTA - OPD_BREDI -
12 PsiBlast_PDB 90.3229% -62 - C3 -2D2G - ? -
14 PsiBlast_PDB 90.2429% -61 - C3 -2D2J 2.4 ?