@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1978: (2016-03-30 )
MTDELEQKALITIFGGTGDLANRKLYPSLYHLYSKGSLGDNFAVIGTARREWSNDFFRDKVKESIKDIDGSEKDADAFASHFYYQSHDVTNKESYLTLKDLSDELDAKYELDGNRLFYLAMAPNFFGTIASRIKSEGFVDTDGFHRLIIEKPFGHDLASAEELNNSLRQAFKEDEIYRIDHYLGKEMIQNISVIRFANSIIESLWNNRYIDNIQVTLTEVLGVEDRGRYYDESGALRDMVQNHILQIVSLLAMEPPINLSTREIRHEKVRALRSLRVFEGKEVHQSFIRGQYGPGEVDGKELKGYRQEDNVDPHSNTETFVAAKLEIDNFRWAGVPFYIRTGKRLAKKTTQIAIQFKDVPLNLFGQQQSLGGNVLVIHIQPDEGITLHLNVKEPGQGMVTMPVNLNYIHSSPDGMNTPEAYEKLILDCLRGDATYFSHWDEVSLSWNFIDHIADVWTNTKDHFPNYKSGSMGPKEADDLIQRDGFQWFPID

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_5(1H9A)
G6PD_LEUME
[Raw transfer]




NAD_A_3(1H94)
G6PD_LEUME
[Raw transfer]




NAP_C_3(2DPG)
G6PD_LEUME
[Raw transfer]




NDP_A_4(1E7Y)
G6PD_LEUME
[Raw transfer]




NAP_A_3(2BH9)
G6PD_HUMAN
[Raw transfer]




NAP_A_3(2BH9)
G6PD_HUMAN
[Raw transfer]




BG6_A_5(2BHL)
G6PD_HUMAN
[Raw transfer]




BG6_B_7(2BHL)
G6PD_HUMAN
[Raw transfer]




BG6_A_2(1E7Y)
G6PD_LEUME
[Raw transfer]




21 PsiBlast_CBE 95.8547% -83 - C3 -1DPG - G6PD_LEUME -
6 PsiBlast_PDB 95.2347% -81 - C3 -1E7M - G6PD_LEUME -
5 PsiBlast_PDB 95.1847% -80 - C3 -1H94 6.3 G6PD_LEUME
3 PsiBlast_PDB 95.1547% -82 - C3 -1H9B - G6PD_LEUME -
1 PsiBlast_PDB 95.1247% -81 - C3 -1E77 - G6PD_LEUME -
2 PsiBlast_PDB 95.1047% -79 - C3 -1H9A 11.0 G6PD_LEUME
9 PsiBlast_PDB 94.9647% -79 - C3 -2DPG 4.8 G6PD_LEUME
8 PsiBlast_PDB 94.5747% -81 - C3 -1DPG - G6PD_LEUME -
7 PsiBlast_PDB 94.4647% -80 - C3 -1E7Y 6.1 G6PD_LEUME
59 Fugue 94.4147% -83 - C3 -1DPG - G6PD_LEUME -
4 PsiBlast_PDB 94.2747% -82 - C3 -1H93 - G6PD_LEUME -
39 HHSearch 94.0547% -81 - C3 -1DPG - G6PD_LEUME -
30 PsiBlast_CBE 87.7236% -81 - C3 -4EM5 - ? -
31 PsiBlast_CBE 87.5336% -82 - C3 -4EM5 - ? -
33 PsiBlast_CBE 87.3736% -81 - C3 -4E9I - ? -
34 PsiBlast_CBE 87.2936% -80 - C3 -4E9I - ? -
14 PsiBlast_PDB 86.5636% -80 - C3 -4EM5 - ? -
29 PsiBlast_CBE 86.5236% -80 - C3 -1QKI - G6PD_HUMAN -
22 PsiBlast_CBE 86.2336% -79 - C3 -2BHL 3.9 G6PD_HUMAN
32 PsiBlast_CBE 86.1136% -80 - C3 -4EM5 - ? -
11 PsiBlast_PDB 86.1036% -82 - C3 -2BHL 3.6 G6PD_HUMAN
40 HHSearch 85.6935% -79 * C3 *2BH9 6.2 G6PD_HUMAN
10 PsiBlast_PDB 85.5836% -84 - C3 -2BH9 5.4 G6PD_HUMAN