@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2013: (2016-03-31 )
MTNKVPASFNKWIEKVKTTFPENEKLHRMFEKCFTNTYTTTLQETEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEEDEEMATVIENLVKLQTKCILHDPYANAFNKSANGAGFQNDKTAMTNLVWERKYEIDSLCYPIQLAYLLWKSTNRTGHFTEEFRKALHQIIEVFKIEQKHTEQSPYRFERENVRQSDTLNNNGKGTDVSYTGMSWSGFRPSDDACMYGYLVPSNMFLVVVMDYVQEIAATFYPEDKELPKESSDLRKEVAAGIETYAKQVHPYYGDVYAYEVDGTGRKLFMDDANVPSLLAATYLGFCEKTDPAYQATRKLILSRENPYFVEGSVLTGIGSPHTPDHYVWPIALSIEGLTAETEAEKQAILEMLIAGDGGTDYMHEGVNASNPAEFTRDWFAWSNAMFSEFVLSLCGVYVKGSPLSK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YDR_A_8(3QT9)
?
[Raw transfer]



YDR_A_8(3QT9)
?
[Raw transfer]



DMJ_A_10(3QRY)
?
[Raw transfer]



DMJ_B_3(3QRY)
?
[Raw transfer]



DMJ_B_3(3QRY)
?
[Raw transfer]



EDO_A_5(3QSP)
?
[Raw transfer]



EDO_A_9(3ON6)
?
[Raw transfer]



EDO_A_2(3QT3)
?
[Raw transfer]



SUGAR_B_8(3QSP)
?
[Raw transfer]
-
SUGAR_A_3(3QSP)
?
[Raw transfer]
-
EDO_A_3(3P2C)
?
[Raw transfer]



EDO_A_3(3P2C)
?
[Raw transfer]
3 PsiBlast_PDB 96.5349% -90 - C2 -3QPF - ? -
20 PsiBlast_CBE 96.2349% -91 - C2 -3QPF - ? -
22 HHSearch 96.0549% -85 - C2 -3QRY 3.6 ?
5 PsiBlast_PDB 95.7649% -88 - C2 -3QSP 3.5 ?
19 PsiBlast_CBE 95.7249% -90 - C2 -3QRY 4.2 ?
18 PsiBlast_CBE 95.6349% -88 - C2 -3QSP 3.0 ?
24 HHSearch 95.5550% -84 - C2 -3QT9 6.8 ?
4 PsiBlast_PDB 95.1549% -90 - C2 -3QRY 3.6 ?
1 PsiBlast_PDB 93.9452% -86 - C2 -3QT3 2.4 ?
2 PsiBlast_PDB 93.6552% -82 - C2 -3QT9 6.8 ?
21 HHSearch 93.3042% -75 - C2 -3P2C 2.8 ?
9 PsiBlast_PDB 91.7343% -81 - C2 -3P2C 2.8 ?
7 PsiBlast_PDB 91.0243% -81 - C2 -3ON6 3.6 ?
23 HHSearch 76.4343% -4 - C2 -2P0V - ? -
6 PsiBlast_PDB 73.1351% 3 - C2 -2NVP - ? -
8 PsiBlast_PDB 70.7843% 3 - C2 -2P0V - ? -
25 HHSearch 57.4112% -54 - C2 -2FBA - AMYG_SACFI -
30 HHSearch 56.5614% -67 * C2 *3W7T - YGJK_ECOLI -
32 HHSearch 56.2515% -54 - C2 -2OKX - ? -
31 HHSearch 55.2613% -74 - C2 -2JG0 - TREA_ECOLI -