@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2022: (2016-03-31 )
MIYFDHAATTKMSEAALEVFMSASREFFANSESLHDAGTKSAALLEKCRGSFAEILHVPSRGIMFTSGGTESNQIAIQTLLHSTKKKEVLVSPLEHASVWQQLEALEEAGACWLRLLPVDAFGRVDPAVLSDMISPDTGLVIIQHVNSEIGSIQPIRELAHIAKQAGVYFHTDIVQSFGKLDLTLDDVTSFSISSHKIYGPKGAGLLFIKPDVPMQVPLPNVHHEFGFRPGTVNVPAIAAFTTAAYDIMGNREKEARRIAELKKAICEALTAKVKVEGGLNTSPFILGITLPNMQGQEALLALNEADIQISTTSACSLRDPAPSRTLLATGKTIEEASRFIRLSFGRENELSDSLIFKKELDKLLRKR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_C_3(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PMP_A_5(4HVK)
ISCS2_ARCFU
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_5(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_B_8(4EB7)
ISCS2_ARCFU
[Raw transfer]



PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_B_9(4EB5)
ISCS2_ARCFU
[Raw transfer]



PLP_A_5(4EB5)
ISCS2_ARCFU
[Raw transfer]



PLP_A_4(4EB7)
ISCS2_ARCFU
[Raw transfer]



PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]
30 HHSearch 91.7831% -90 - C1 -1EG5 3.9 ?
5 PsiBlast_PDB 90.9730% -94 - C1 -1EG5 3.9 ?
6 PsiBlast_PDB 90.1931% -90 - C1 -3LVJ 4.0 ISCS_ECO57
4 PsiBlast_PDB 89.4330% -94 - C1 -1ECX 3.8 ?
53 Fugue 88.1129% -89 - C1 -1ECX - ? -
23 PsiBlast_CBE 86.2331% -88 - C1 -3LVJ 3.9 ISCS_ECO57
7 PsiBlast_PDB 84.3331% -87 - C1 -3LVK 3.5 ISCS_ECO57
54 Fugue 83.3529% -93 - C1 -4ISY - ISCSL_MYCTU -
8 PsiBlast_PDB 81.6230% -85 - C1 -3VAX 3.4 ?
36 HHSearch 77.3728% -77 - C1 -3A9Z - SCLY_RAT -
3 PsiBlast_PDB 77.3532% -79 - C1 -4HVK 3.7 ISCS2_ARCFU
9 PsiBlast_PDB 76.6729% -84 - C1 -4ISY - ISCSL_MYCTU -
21 PsiBlast_CBE 76.6032% -82 - C1 -4EB7 2.9 ISCS2_ARCFU
32 HHSearch 76.4129% -78 - C1 -3VAX - ? -
1 PsiBlast_PDB 75.8832% -79 - C1 -4EB5 2.9 ISCS2_ARCFU
2 PsiBlast_PDB 75.3132% -77 - C1 -4EB7 3.2 ISCS2_ARCFU
31 HHSearch 74.3322% -85 - C1 -1ELU - ? -
22 PsiBlast_CBE 74.3232% -80 - C1 -4EB5 3.7 ISCS2_ARCFU
12 PsiBlast_PDB 74.0327% -79 - C1 -3GZC - SCLY_HUMAN -
13 PsiBlast_PDB 73.4530% -84 - C1 -4IXO - ? -