@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2023: (2016-03-31 )
MIKERVIIVGSGISGCTAALRLMQDYDVTIITKGYKEESNSMLAQGGVAAAVSKNDTPKKHFSDTFQAGCFHNKVLAVNQLVTHGPMVIQKLIAEGMAFDEQDGELALGLEGAHQLPRILHTGGDQTGKFLTTFLQEKLTDIHWQEQKMAIEIIKQNDSAIGVHCLDKENRLHTYYGEHIILASGGLGQLFPVTTNAATISGDGLALAYRAGAKLTDMEFIQFHPTLLFLNGRCHGLISEAVRGEGAKLIRADGSAIMTDVHPRADLAPRDIVAATLFAEIQDGNEVFLDITAIPNFEKRFPGITANLDAHHIPFRETKRIPVHPGAHFLMGGIRTDLSGKTNIPGLYAIGEVANAGVHGANRLASNSLLETLVFGEKVAEYIRTQKINPIDHPEIPLSNQIQTPHLPDKQLLQEKIWETLGITRKPEKITEFLHWLTDFDYANHTRKTAEISHMLITAKLIAESALKRTESLGAHRILKGVIK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TEO_A_11(1YQ3)
SDHA_CHICK
[Raw transfer]



FAD_A_5(2E5V)
NADB_SULTO
[Raw transfer]



FAD_A_3(1KNP)
NADB_ECOLI
[Raw transfer]



FAD_A_5(2E5V)
NADB_SULTO
[Raw transfer]



FAD_A_4(1KNR)
NADB_ECOLI
[Raw transfer]



FAD_B_6(2E5V)
NADB_SULTO
[Raw transfer]



MEZ_A_8(1Y0P)
FRDA_SHEFR
[Raw transfer]



FUM_A_15(1JRX)
FRDA_SHEFR
[Raw transfer]



3NP_A_10(1ZP0)
SDHA_PIG
[Raw transfer]



3NP_A_11(1YQ4)
SDHA_CHICK
[Raw transfer]
24 PsiBlast_PDB 90.6533% -80 - C5 -1KNP 12.6 NADB_ECOLI
25 PsiBlast_PDB 90.6133% -80 - C5 -1KNR 12.0 NADB_ECOLI
23 PsiBlast_PDB 87.4433% -94 - C5 -1CHU - NADB_ECOLI -
3 HHSearch 86.5535% -85 - C5 -1CHU - NADB_ECOLI -
96 Fugue 85.7033% -85 - C5 -1CHU - NADB_ECOLI -
6 HHSearch 85.2235% -76 - C5 -2E5V 12.4 NADB_SULTO
22 PsiBlast_PDB 84.7434% -76 - C5 -2E5V 12.9 NADB_SULTO
5 HHSearch 84.0230% -70 - C5 -1KF6 - FRDA_ECOLI -
42 PsiBlast_CBE 83.9734% -76 - C5 -2E5V 13.0 NADB_SULTO
1 HHSearch 82.5229% -66 - C5 -2BS2 - FRDA_WOLSU -
4 HHSearch 82.2830% -68 - C5 -2WDQ - SDHA_ECOLI -
30 PsiBlast_PDB 81.4729% -65 - C5 -3P4S - FRDA_ECOLI -
27 PsiBlast_PDB 81.1829% -62 - C5 -3P4R - FRDA_ECOLI -
32 PsiBlast_PDB 81.0729% -60 - C5 -1KF6 - FRDA_ECOLI -
97 Fugue 81.0428% -67 - C5 -1E7P - FRDA_WOLSU -
34 PsiBlast_PDB 80.9629% -61 - C5 -1L0V - FRDA_ECOLI -
31 PsiBlast_PDB 80.8729% -61 - C5 -4KX6 - FRDA_ECOLI -
29 PsiBlast_PDB 80.8429% -60 - C5 -3P4Q - FRDA_ECOLI -
26 PsiBlast_PDB 80.7929% -63 - C5 -2B76 - FRDA_ECOLI -
2 HHSearch 80.7830% -67 - C5 -2H88 - SDHA_CHICK -
99 Fugue 73.6230% -58 - C5 -1JRX 3.7 FRDA_SHEFR
65 PsiBlast_CBE 71.1632% -65 - C5 -1ZP0 2.7 SDHA_PIG
36 PsiBlast_PDB 70.7032% -61 - C5 -1YQ4 2.8 SDHA_CHICK
35 PsiBlast_PDB 70.6632% -62 - C5 -1YQ3 4.6 SDHA_CHICK