@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2024: (2016-03-31 )
MNSILMNQAIQAFLLEDIGQYDLSAGTVFPRDTMGEGVFLAKETGILCGISIPPKVYELLGGNIQFEAYKKDGDWVQKGDIIAAVKAPVRTLLSGERVILNLMQRMSGIASQTNFAIKQLDDSAIRICDTRKTAPGLRAFDKYAVQTGGGFNHRNGLYDGVMLKDNHIAFSGGITSAVSTVRGKLGHMVKIEVETETAEQVKEAVQAGADIIMFDNRTPEEIKQLVKLVPPHITTEISGNVTLENIHRYKGSGANYISLGSLTHSVRAFDISFNSKGGIKA

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NCN_K_11(2B7Q)
NADC_HELPY
[Raw transfer]




NCN_I_9(2B7Q)
NADC_HELPY
[Raw transfer]




NCN_A_3(4I9A)
?
[Raw transfer]




NCN_G_7(2B7Q)
NADC_HELPY
[Raw transfer]




NCN_B_4(4I9A)
?
[Raw transfer]




NTM_M_13(2B7N)
NADC_HELPY
[Raw transfer]




NTM_M_13(2B7N)
NADC_HELPY
[Raw transfer]




NTM_O_15(2B7N)
NADC_HELPY
[Raw transfer]




PHT_Q_17(2B7P)
NADC_HELPY
[Raw transfer]




NTM_Q_17(2B7N)
NADC_HELPY
[Raw transfer]




PHT_O_15(2B7P)
NADC_HELPY
[Raw transfer]




PHT_M_13(2B7P)
NADC_HELPY
[Raw transfer]




PHT_B_4(3C2R)
NADC_YEAST
[Raw transfer]




NTM_A_2(3C2O)
NADC_YEAST
[Raw transfer]




NTM_B_4(1QAP)
NADC_SALTY
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




PHT_A_3(3C2R)
NADC_YEAST
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




PRP_A_2(3C2F)
NADC_YEAST
[Raw transfer]




PRP_A_2(3C2V)
NADC_YEAST
[Raw transfer]




EDO_D_11(3L0G)
?
[Raw transfer]




EDO_C_9(3L0G)
?
[Raw transfer]




EDO_A_5(3L0G)
?
[Raw transfer]




EDO_A_5(3L0G)
?
[Raw transfer]




EDO_B_7(3L0G)
?
[Raw transfer]




90 HHSearch 90.5042%-100 - C5 -1X1O - ? -
1 PsiBlast_PDB 89.6843%-103 - C5 -1X1O - ? -
82 HHSearch 88.8438% -96 * C5 *3PAJ - ? -
2 PsiBlast_PDB 86.6539% -91 - C5 -3PAJ - ? -
83 HHSearch 86.3135% -99 - C5 -2B7N 3.5 NADC_HELPY
72 Fugue 84.1736% -92 - C5 -1QAP 3.0 NADC_SALTY
84 HHSearch 84.0035%-104 - C5 -3TQV - ? -
87 HHSearch 83.5237% -93 - C5 -1QAP 3.0 NADC_SALTY
5 PsiBlast_PDB 83.3335%-109 - C5 -3TQV - ? -
7 PsiBlast_PDB 83.0936% -93 - C5 -2B7N 3.5 NADC_HELPY
27 PsiBlast_CBE 82.2936% -90 - C5 -2B7P 3.9 NADC_HELPY
23 PsiBlast_CBE 82.1735%-103 - C5 -3L0G 2.8 ?
30 PsiBlast_CBE 82.0636% -91 - C5 -2B7N 3.6 NADC_HELPY
89 HHSearch 81.8832% -89 - C5 -1QPO - NADC_MYCTU -
3 PsiBlast_PDB 81.7037% -96 - C5 -1QAP 3.0 NADC_SALTY
85 HHSearch 81.6435%-103 - C5 -3L0G 3.4 ?
25 PsiBlast_CBE 81.5536% -90 - C5 -2B7Q 4.9 NADC_HELPY
29 PsiBlast_CBE 81.2736% -90 - C5 -2B7N 3.4 NADC_HELPY
22 PsiBlast_CBE 81.0935%-103 - C5 -3L0G 2.9 ?
8 PsiBlast_PDB 81.0836% -87 - C5 -2B7P 3.7 NADC_HELPY
26 PsiBlast_CBE 80.6636% -90 - C5 -2B7Q 4.8 NADC_HELPY
4 PsiBlast_PDB 80.6435%-105 - C5 -3L0G 3.4 ?
21 PsiBlast_CBE 80.5037% -95 - C5 -1QAP 3.7 NADC_SALTY
24 PsiBlast_CBE 80.1035%-103 - C5 -3L0G 2.9 ?
28 PsiBlast_CBE 79.9136% -89 - C5 -2B7P 3.7 NADC_HELPY
9 PsiBlast_PDB 79.9136% -89 - C5 -2B7Q 4.4 NADC_HELPY
17 PsiBlast_PDB 77.3433%-103 - C5 -3C2F 2.2 NADC_YEAST
14 PsiBlast_PDB 77.0433%-104 - C5 -3C2R 3.5 NADC_YEAST
18 PsiBlast_PDB 76.8333% -98 - C5 -3C2V 2.9 NADC_YEAST
69 PsiBlast_CBE 76.5035% -89 - C5 -4I9A 5.0 ?
16 PsiBlast_PDB 75.3533%-105 - C5 -3C2O 2.7 NADC_YEAST
70 PsiBlast_CBE 75.2135% -93 - C5 -4I9A 4.1 ?
51 PsiBlast_CBE 74.6333%-100 - C5 -3C2R 2.9 NADC_YEAST