Study : Lmo2050 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

Download fasta file
Download text file


Binding Site Number :C3_S1
Best Complexes choosen after comparative docking [pKd > 3] : 1 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C3_S1
Complex: PPV_A_3(3PIH) / Model_119(3PIH/A) = [3.1] Download473.88-10.67MVQEYIRLRGARENNLQNISLDIPKRKITIFTGVSGSGKSSIVFETIATESQRQLNETYSAYLRNFLPKYTQPDADSIENLSTSVIIDQKRLGGNSRSTLGTITDINSILRLLFSRVGKPSIGTANLFSFNDPAGMCPDCHGVGQKVSVDLVKLLDPNKSLKEGAILFPTFSVDSWYWNSYAYSGFFDVNKKIKDYTDEEYDMLLHGKDIKVFLETPMGSMNATYEGLIPKFNRLYIQKEGEMSASTKKRVDKFTHIAPCTTCEGTRLSAQALSCKINGANIADFTAMQLDELKDTIARIDDPIATPMVKSVTERLQHLIDIGLGYMTLDRQTASLSGGESQRVKMIRHLNSSLTDLLYIFDEPSIGLHPRDVHRLNELLVKLRDKGNTILVVEHDPDVIKIADHVVDVGPHAGKHGGEIQFVGSYTDLLKSDTLTGQFLNRHLPINSKPRQPKGFLTTEKSSRFNLKNIQANIPKEVLTVITGVAGSGKSTLIHSVFLKEYPDAIVIDQSAAHANIRSNPATYTGIMDPIRKAFGKENDVSPSLFSYNSKGACENCKGLGFTTMDLAFMDSIRTPCEVCHGKRFQDSVLQYKLNGKSISDVLELTVSEALDFFTDKKILKKIEAMEEVGIGYVTLGQALSTLSGGECQRLKLANELHKKGSIYIMDEPTTGLHMSDIEHILTIIHTLVNKGNTVIVIEHNVDIIRNADWIIDLGPEGGSAGGQIIFEGAPLDLLENQQSLTAKYL
Consensus
[pKd Mean = 3.10]
-473
(s=0)
-10
(s=0)
MVQEYIRLRGARENNLQNISLDIPKRKITIFTGVSGSGKSSIVFETIATESQRQLNETYSAYLRNFLPKYTQPDADSIENLSTSVIIDQKRLGGNSRSTLGTITDINSILRLLFSRVGKPSIGTANLFSFNDPAGMCPDCHGVGQKVSVDLVKLLDPNKSLKEGAILFPTFSVDSWYWNSYAYSGFFDVNKKIKDYTDEEYDMLLHGKDIKVFLETPMGSMNATYEGLIPKFNRLYIQKEGEMSASTKKRVDKFTHIAPCTTCEGTRLSAQALSCKINGANIADFTAMQLDELKDTIARIDDPIATPMVKSVTERLQHLIDIGLGYMTLDRQTASLSGGESQRVKMIRHLNSSLTDLLYIFDEPSIGLHPRDVHRLNELLVKLRDKGNTILVVEHDPDVIKIADHVVDVGPHAGKHGGEIQFVGSYTDLLKSDTLTGQFLNRHLPINSKPRQPKGFLTTEKSSRFNLKNIQANIPKEVLTVITGVAGSGKSTLIHSVFLKEYPDAIVIDQSAAHANIRSNPATYTGIMDPIRKAFGKENDVSPSLFSYNSKGACENCKGLGFTTMDLAFMDSIRTPCEVCHGKRFQDSVLQYKLNGKSISDVLELTVSEALDFFTDKKILKKIEAMEEVGIGYVTLGQALSTLSGGECQRLKLANELHKKGSIYIMDEPTTGLHMSDIEHILTIIHTLVNKGNTVIVIEHNVDIIRNADWIIDLGPEGGSAGGQIIFEGAPLDLLENQQSLTAKYL