@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2075: (2016-03-31 )
VGGLMKKNTLILGIESSCDETAASVVKNGNEIISSVVASQIESHKRFGGVVPEIASRHHVEQITLVIEEALKQANVTMDDLDGVAVTEGPGLVGALLIGVNAAKTLAFMHNLPLVGVHHIAGHIYANRFETEFKFPLLSLVVSGGHTELVLMKADNEFEIIGETRDDAAGEAYDKVARTLGLAYPGGVQIDKLAKDGEDTFHFPRAMMDEGSFDFSFSGLKSSFINTLHNLRQRGEEPNPNDMAASFQASVVDVLVSKTIRAAKQYDVKQLLLAGGVAANQGLRERLIQEVKLELPETELIIPPLALCGDNAAMIAAAGTVSFLQGKRSGFDMNANPGLLLEDI

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_E_16(3ZEU)
?
[Raw transfer]



AGS_B_10(3ZEU)
?
[Raw transfer]



ATP_B_14(4WQ5)
TSAD_ECOLI
[Raw transfer]



ATP_B_9(4WQ4)
TSAD_ECOLI
[Raw transfer]



AGS_B_10(3ZEU)
?
[Raw transfer]



ADP_A_5(4YDU)
TSAD_ECOLI
[Raw transfer]



ATP_A_6(4WQ4)
TSAD_ECOLI
[Raw transfer]



ADP_B_12(4YDU)
TSAD_ECOLI
[Raw transfer]



ATP_A_7(4WQ5)
TSAD_ECOLI
[Raw transfer]



ANP_A_3(2VWB)
KAE1B_METJA
[Raw transfer]



ATP_A_3(2IVP)
KAE1_PYRAB
[Raw transfer]



ANP_B_4(2VWB)
KAE1B_METJA
[Raw transfer]



ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]



ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]



ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]



AMP_B_4(3ZET)
?
[Raw transfer]



AMP_A_4(3WUH)
QRI7_YEAST
[Raw transfer]



AMP_B_6(3WUH)
QRI7_YEAST
[Raw transfer]
4 PsiBlast_PDB 94.5242% -90 - C3 -4WQ4 5.2 TSAD_ECOLI
1 PsiBlast_PDB 94.3642% -89 - C3 -3ZET 5.8 ?
23 PsiBlast_CBE 94.2942% -88 - C3 -4WQ4 5.8 TSAD_ECOLI
3 PsiBlast_PDB 94.2842% -89 - C3 -4YDU 6.3 TSAD_ECOLI
21 PsiBlast_CBE 94.2042% -89 - C3 -3ZEU 6.6 ?
22 PsiBlast_CBE 94.1842% -87 - C3 -4YDU 6.1 TSAD_ECOLI
5 PsiBlast_PDB 94.1842% -88 - C3 -4WQ5 6.7 TSAD_ECOLI
24 PsiBlast_CBE 93.0742% -87 - C3 -4WQ5 7.2 TSAD_ECOLI
2 PsiBlast_PDB 92.9142% -86 - C3 -3ZEU 7.3 ?
36 HHSearch 91.6442% -88 - C3 -3ZEU 6.3 ?
6 PsiBlast_PDB 87.2335%-100 - C3 -2IVN 6.6 KAE1_PYRAB
26 PsiBlast_CBE 87.1635%-103 - C3 -2IVO - KAE1_PYRAB -
27 PsiBlast_CBE 86.6135%-102 - C3 -2IVO - KAE1_PYRAB -
7 PsiBlast_PDB 86.4735%-102 - C3 -2IVO - KAE1_PYRAB -
8 PsiBlast_PDB 86.1235%-102 - C3 -2IVP 6.2 KAE1_PYRAB
25 PsiBlast_CBE 85.9935%-104 - C3 -2IVO - KAE1_PYRAB -
39 HHSearch 85.5832% -92 - C3 -2IVN 5.9 KAE1_PYRAB
9 PsiBlast_PDB 84.2632% -94 - C3 -3WUH 4.8 QRI7_YEAST
57 Fugue 84.2332% -91 - C3 -2IVN 6.4 KAE1_PYRAB
28 PsiBlast_CBE 82.5532% -96 - C3 -3WUH 5.2 QRI7_YEAST
11 PsiBlast_PDB 82.3631% -89 - C3 -2VWB 5.8 KAE1B_METJA
30 PsiBlast_CBE 81.0131% -88 - C3 -2VWB 5.0 KAE1B_METJA