@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2105: (2016-03-31 )
MSQNTYCLLGNPNTGKTSLFNALTGSYEYVGNWSGVTVEKKVGTLRSKTGKLIDLPGIYDLNPISRDETVVTRFLLEEKFDCMLNIVDSSQIERNLNLTIQLLEFGAPVVMGLNMIDVAAGRGIHLNIQNLAKKLRIPILPVVARSGKGTDDILTTLSEKHVAPAIPLVLPYGEPAEKAIAEIQALTKDIIPTKQSRWLAVQFLSKNEVTEEFLTTSPMFEQLKDIRSDLEIALAGKLENHFHQVRVNYIHDICLTSVEYTRNSDIPLSDKLDKIFTHKFFGIPIFLGIMWLIFQITFTWVGAPLSDLLDGFIGGSLTDWVTSFLTTIGASGFITDLVADGIIAGVGGVLVFVPQILVIFFFISVLEDSGYMARIAVVMDRVMEIFGLNGKAFIPMIIGFGCNVPGIMAARSIEESKERTLTILVSPFMSCSARLPVYALFVGVFFEKYQALVVLSLYVIGILMALIVTKILSKTLLKKDNSVFVVELPPYRLPSLKTLWRSTWEKGKGFLRKAGTFIFAGSVIIWLLNYAGPSGLDVPMGESFLAIIGGMLAPLLVPLGFGTWQAGATLIPGFLAKEVVVSTMAIIYAVGESSMGSIVSTFYTPLSAYCFMLFILLYIPCLATVAAIRKETSSWKWTAFAVAYPLITAYVLVFLVYQIGSLFV

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_B_7(3A1U)
?
[Raw transfer]




GGM_A_2(3B1V)
?
[Raw transfer]




GNP_B_5(3B1X)
?
[Raw transfer]




GGM_A_2(3B1V)
?
[Raw transfer]




AGO_A_2(3LX5)
?
[Raw transfer]




GNP_A_3(3B1X)
?
[Raw transfer]




GDP_A_3(3SS8)
?
[Raw transfer]




GDP_B_7(3SS8)
?
[Raw transfer]




GNP_A_2(2WIC)
?
[Raw transfer]




AGO_A_4(3HYT)
FEOB_ECOLI
[Raw transfer]




GNH_A_2(3B1Y)
?
[Raw transfer]




GNP_A_3(2WJI)
FEOB_METJA
[Raw transfer]




GNP_A_3(2WJI)
FEOB_METJA
[Raw transfer]




GDP_B_4(2WIB)
?
[Raw transfer]




GDP_B_6(3B1W)
?
[Raw transfer]




GNP_B_5(2WJI)
FEOB_METJA
[Raw transfer]




BGO_B_6(3TAH)
?
[Raw transfer]




GDP_B_5(2WJG)
FEOB_METJA
[Raw transfer]




GDP_A_3(2WIB)
?
[Raw transfer]




GCP_B_7(3I92)
FEOB_ECOLI
[Raw transfer]




AGO_C_8(3HYT)
FEOB_ECOLI
[Raw transfer]




GDP_B_5(3I8X)
FEOB_ECOLI
[Raw transfer]




GNP_B_7(3A1U)
?
[Raw transfer]




GDP_A_2(3LX8)
?
[Raw transfer]




GDP_C_7(3B1W)
?
[Raw transfer]




GDP_A_3(4NON)
?
[Raw transfer]




AGO_B_6(3HYT)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(2WJH)
FEOB_METJA
[Raw transfer]




GDP_B_4(4NON)
?
[Raw transfer]




BGO_A_3(3TAH)
?
[Raw transfer]




GDP_A_5(3B1W)
?
[Raw transfer]




GDP_A_4(2WJG)
FEOB_METJA
[Raw transfer]




GDP_A_4(2WJG)
FEOB_METJA
[Raw transfer]




GCP_A_5(3I92)
FEOB_ECOLI
[Raw transfer]




GDP_D_8(3B1W)
?
[Raw transfer]




GDP_C_6(3I8X)
FEOB_ECOLI
[Raw transfer]




GDP_A_2(3A1T)
?
[Raw transfer]




GCP_C_9(3I92)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(3W5J)
?
[Raw transfer]




GDP_A_3(3W5J)
?
[Raw transfer]




FLC_B_6(2WJH)
FEOB_METJA
[Raw transfer]




GNH_A_3(4R98)
FEOB_ECOLI
[Raw transfer]




26 PsiBlast_CBE 92.1234% -92 - C5 -3TAH 6.9 ?
8 PsiBlast_PDB 91.4934% -96 - C5 -3B1W 7.0 ?
9 PsiBlast_PDB 90.9334% -92 - C5 -3TAH 6.4 ?
10 PsiBlast_PDB 90.4635% -92 - C5 -4NON 6.8 ?
7 PsiBlast_PDB 90.4434% -88 - C5 -3B1V 11.4 ?
63 HHSearch 90.2734% -90 - C5 -3B1V 11.4 ?
62 HHSearch 90.0535% -86 - C5 -3I8S - FEOB_ECOLI -
27 PsiBlast_CBE 89.8235% -99 - C5 -4NON 6.7 ?
24 PsiBlast_CBE 89.7034% -92 - C5 -3B1W 6.7 ?
2 PsiBlast_PDB 89.6934% -93 - C5 -3LX8 7.2 ?
25 PsiBlast_CBE 89.6334% -93 - C5 -3B1W 7.0 ?
6 PsiBlast_PDB 88.1734% -93 - C5 -3B1Y 7.8 ?
23 PsiBlast_CBE 88.0034% -92 - C5 -3B1W 6.6 ?
4 PsiBlast_PDB 87.8434% -90 - C5 -3B1Z - ? -
1 PsiBlast_PDB 87.4634% -87 - C5 -3LX5 10.7 ?
84 Fugue 87.2434% -94 - C5 -3I8S - FEOB_ECOLI -
5 PsiBlast_PDB 86.8834% -90 - C5 -3B1X 10.0 ?
22 PsiBlast_CBE 86.7134% -89 - C5 -3B1X 10.1 ?
13 PsiBlast_PDB 86.6935% -84 - C5 -2WIB 6.2 ?
3 PsiBlast_PDB 86.6434% -93 - C5 -3SS8 8.1 ?
28 PsiBlast_CBE 85.7535% -91 - C5 -2WIB 6.3 ?
21 PsiBlast_CBE 85.5634% -89 - C5 -3SS8 7.7 ?
14 PsiBlast_PDB 85.3435% -96 - C5 -2WIC 8.0 ?
17 PsiBlast_PDB 84.9439% -99 - C5 -3I92 6.1 FEOB_ECOLI
33 PsiBlast_CBE 82.4939% -92 - C5 -3I8X 7.0 FEOB_ECOLI
37 PsiBlast_CBE 81.8139% -96 - C5 -4R98 6.0 FEOB_ECOLI
48 PsiBlast_CBE 81.4236% -86 - C5 -3A1T 6.4 ?
31 PsiBlast_CBE 81.3539% -90 - C5 -3I92 6.9 FEOB_ECOLI
47 PsiBlast_CBE 81.3336% -82 - C5 -3A1U Error ?
32 PsiBlast_CBE 81.2239% -92 - C5 -3I8X 6.1 FEOB_ECOLI
30 PsiBlast_CBE 79.8039% -89 - C5 -3I92 5.5 FEOB_ECOLI
18 PsiBlast_PDB 78.6339% -92 - C5 -3HYT 7.3 FEOB_ECOLI
46 PsiBlast_CBE 77.4236% -83 - C5 -3A1U 7.3 ?
35 PsiBlast_CBE 76.6639% -92 - C5 -3HYT 4.9 FEOB_ECOLI
34 PsiBlast_CBE 76.4339% -90 - C5 -3HYT 6.8 FEOB_ECOLI
67 HHSearch 76.3140% -82 * C5 *2WJG 5.6 FEOB_METJA
42 PsiBlast_CBE 76.2741% -89 - C5 -2WJG 5.8 FEOB_METJA
43 PsiBlast_CBE 75.8741% -90 - C5 -2WJG 5.6 FEOB_METJA
39 PsiBlast_CBE 74.6841% -88 - C5 -2WJH 5.4 FEOB_METJA
38 PsiBlast_CBE 74.6441% -85 - C5 -2WJH 3.2 FEOB_METJA
68 HHSearch 74.2841% -90 - C5 -2WJI 7.1 FEOB_METJA
41 PsiBlast_CBE 74.0341% -94 - C5 -2WJI 7.1 FEOB_METJA
40 PsiBlast_CBE 73.9741% -95 - C5 -2WJI 7.5 FEOB_METJA
69 HHSearch 72.4639% -83 - C5 -3W5J 5.8 ?
50 PsiBlast_CBE 71.4940% -91 - C5 -3W5J 5.8 ?