@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2126: (2016-04-01 )
MEKAGIYHQPASSYAYSYDAKTLHIRIRTKRLDISKVTLIAADPYLWKDGKWQSESYTMRKIAETEEHDYWFFAITPEHRRLQYGFLLTDTEGETTFYGGRGFFEPTEANLATMDYYFKFPFIHAVDTFEAPEWVRNTIWYQIFPERFANGNPAISPENTLPWGSKDPNTTDFFGGDIEGIIEHLDYLAELGINGVYLTPVFEAPTNHKYDTIDYKKIDPHFGDKETFRKLVKEAHKRGIRIMLDAVFNHIGDTSPEWQDVVEKEEKSAYRDWFHIHSFPVRQNENGNIEGEPTLSYDTFAFTTHMPKLNTANPEVQKYLLDIATYWIREFDIDGWRLDVANEVDHAFWKEFKKAAQAEKEDIYILGEIWHDSWIWLLGDEFHAVMNYPFTQTIIENFIEEKITPEQMVSGINEQYMRYPNQVNEVMFNMLDSHDTARILTRANNDEDKVKQALAFMFAHTGSPCIYYGTEIGMDGGNDPGCRKCMEWDEAKQNQDMLAFTKQLIALRKDNQAIITSGELTWLEASSETGITAFSKELNGEKLHFLFNQTKKDQDFTISFANTAIDIWNNQAVSDNLTIPAKGFLVIKENS

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MTT_D_4(1JIB)
NEPU2_THEVU
[Raw transfer]




ARE_B_6(3A6O)
NEPU2_THEVU
[Raw transfer]




ARE_A_4(3A6O)
NEPU2_THEVU
[Raw transfer]




MTT_C_3(1JIB)
NEPU2_THEVU
[Raw transfer]




SUGAR_C_3(1J0J)
NEPU_GEOSE
[Raw transfer]

-

BCD_A_3(1GVI)
?
[Raw transfer]




SUGAR_D_4(1J0J)
NEPU_GEOSE
[Raw transfer]

-

BCD_B_4(1GVI)
?
[Raw transfer]




SUGAR_B_4(2D2O)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_D_4(1J0K)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_D_4(1J0I)
NEPU_GEOSE
[Raw transfer]

-

BCD_C_3(1JL8)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VFM)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_C_3(1J0K)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_A_3(2D2O)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_C_3(1J0I)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_B_4(1VB9)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_A_3(1VFO)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(1VFO)
NEPU2_THEVU
[Raw transfer]

-

BCD_C_3(1G1Y)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VFU)
NEPU2_THEVU
[Raw transfer]

-

BCD_D_4(1JL8)
NEPU2_THEVU
[Raw transfer]




BCD_D_4(1G1Y)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VB9)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(1VFU)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(1VFM)
NEPU2_THEVU
[Raw transfer]

-

58 HHSearch 96.8853% -84 - C1 -1J0H - NEPU_GEOSE -
4 PsiBlast_PDB 96.6654% -91 - C1 -1J0K 4.4 NEPU_GEOSE
1 PsiBlast_PDB 94.8354% -86 - C1 -1J0H - NEPU_GEOSE -
2 PsiBlast_PDB 94.0654% -86 - C1 -1J0I 3.5 NEPU_GEOSE
21 PsiBlast_CBE 93.6654% -85 - C1 -1J0I 4.1 NEPU_GEOSE
24 PsiBlast_CBE 93.5954% -88 - C1 -1J0J 5.7 NEPU_GEOSE
3 PsiBlast_PDB 93.4454% -86 - C1 -1J0J 5.6 NEPU_GEOSE
48 Fugue 92.8150% -82 - C1 -1SMA - ? -
6 PsiBlast_PDB 92.7753% -84 - C1 -1GVI 5.8 ?
5 PsiBlast_PDB 92.2453% -85 - C1 -1SMA - ? -
22 PsiBlast_CBE 92.0654% -84 - C1 -1J0H - NEPU_GEOSE -
25 PsiBlast_CBE 91.9853% -84 - C1 -1GVI 5.5 ?
23 PsiBlast_CBE 91.5754% -85 - C1 -1J0K 5.0 NEPU_GEOSE
11 PsiBlast_PDB 89.2741% -87 - C1 -1JF6 - NEPU2_THEVU -
15 PsiBlast_PDB 89.2641% -88 - C1 -1VB9 6.1 NEPU2_THEVU
28 PsiBlast_CBE 89.1141% -88 - C1 -1JF6 - NEPU2_THEVU -
59 HHSearch 88.9440% -85 - C1 -1WZL - NEPU2_THEVU -
31 PsiBlast_CBE 88.8741% -89 - C1 -1WZK - NEPU2_THEVU -
32 PsiBlast_CBE 88.7241% -88 - C1 -1VB9 5.8 NEPU2_THEVU
27 PsiBlast_CBE 88.3741% -88 - C1 -1JI2 - NEPU2_THEVU -
26 PsiBlast_CBE 88.3241% -88 - C1 -3A6O 6.1 NEPU2_THEVU
13 PsiBlast_PDB 88.2041% -89 - C1 -1JL8 4.5 NEPU2_THEVU
33 PsiBlast_CBE 88.0941% -88 - C1 -1JL8 3.9 NEPU2_THEVU
30 PsiBlast_CBE 87.5741% -86 - C1 -2D2O 6.3 NEPU2_THEVU
10 PsiBlast_PDB 87.5741% -85 - C1 -3A6O 5.0 NEPU2_THEVU
16 PsiBlast_PDB 87.3741% -86 - C1 -2D2O 5.8 NEPU2_THEVU
34 PsiBlast_CBE 86.8641% -86 - C1 -1JIB 4.7 NEPU2_THEVU
38 PsiBlast_CBE 86.7140% -88 - C1 -1VFU 4.5 NEPU2_THEVU
40 PsiBlast_CBE 86.5140% -86 - C1 -1VFO 5.9 NEPU2_THEVU
41 PsiBlast_CBE 85.9540% -90 - C1 -1VFM 4.1 NEPU2_THEVU
39 PsiBlast_CBE 85.9140% -89 - C1 -1VFO 5.1 NEPU2_THEVU
37 PsiBlast_CBE 85.8140% -87 - C1 -1VFU 3.7 NEPU2_THEVU
14 PsiBlast_PDB 85.3141% -82 - C1 -1JIB 3.6 NEPU2_THEVU
20 PsiBlast_PDB 85.0940% -86 - C1 -1VFM 5.6 NEPU2_THEVU
18 PsiBlast_PDB 84.0041% -89 - C1 -1G1Y 3.4 NEPU2_THEVU
35 PsiBlast_CBE 82.8141% -88 - C1 -1G1Y 3.8 NEPU2_THEVU