@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2139: (2016-04-01 )
VTLELHNVTKKFGTKVAVNDLSFRVEPGKILGLIGQNGAGKTTTFRLILHFLEATSGKITWDGKEVSKIDPNIIGYLPEERGLYPNVTIEEQLIFFAELKGYPKQKIKAEIDSWLERAEIVGKKTDLIKTLSKGNQQKIQLLSTIIHQPKLVILDEPFSGLDPVNAEILKKFVFDLRASGAAIIFSSHRMENVEELCDSLLMLKKGNVVLQGTTESVKSVFGRKRILIESSHSAAELATLPGVLNVQTHRDGVLQLEIAHESDAEKIFDYVTKDGFIQTFSLQAPTLEEIFKWKAGELNE

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4QC2)
?
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




POP_A_9(2D62)
?
[Raw transfer]




GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]




1 PsiBlast_PDB 87.0339%-110 - C1 -1VPL - ? -
53 HHSearch 82.8037% -99 - C1 -1VPL - ? -
3 PsiBlast_PDB 78.9727%-116 - C1 -4WBS - ? -
28 Fugue 78.6125% -75 - C1 -1Z47 - ? -
6 PsiBlast_PDB 76.5726%-108 - C1 -4P33 2.7 LPTB_ECOLI
5 PsiBlast_PDB 76.5226%-104 - C1 -4QC2 7.0 ?
4 PsiBlast_PDB 76.2126%-106 - C1 -4P32 6.3 LPTB_ECOLI
16 PsiBlast_PDB 76.1027%-102 - C1 -3TUI - METN_ECOLI -
41 HHSearch 75.1827% -95 * C1 *3TUI - METN_ECOLI -
34 HHSearch 74.9429% -94 - C1 -1Z47 - ? -
17 PsiBlast_PDB 74.7827%-104 - C1 -3TUZ - METN_ECOLI -
29 Fugue 74.1323% -90 - C1 -3B60 - MSBA_SALTY -
2 PsiBlast_PDB 73.8830%-108 - C1 -4RVC - ? -
10 PsiBlast_PDB 73.3929% -99 - C1 -1Z47 - ? -
12 PsiBlast_PDB 72.2127%-106 - C1 -3DHW - METN_ECOLI -
30 Fugue 72.2023% -73 - C1 -1OXS - ? -
26 Fugue 71.9423% -84 - C1 -3TUZ - METN_ECOLI -
42 HHSearch 70.4627% -89 - C1 -1OXX - ? -
52 HHSearch 68.6726% -90 - C1 -2PCJ - LOLD_AQUAE -
33 Fugue 68.6723% -73 - C1 -4F4C - PGP1_CAEEL -
18 PsiBlast_PDB 61.1831% -95 - C1 -2D62 3.1 ?