@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2175: (2016-04-01 )
MGKLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQKTVELVEKEHGTGLAVVANVTKQEDIENMINQAIEAFGTLDILVNNAGIMDNFVPAGELTDELWDKVFAINTTGVMRATREALHIFEEKGQGVIVNIASAGGLFGSRAGAAYTASKHAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDEFGQERAMIGMGINPRAGDASEIAKVALFLASDDSSFVNGTVITADAGWTAY

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_C_9(4FN4)
?
[Raw transfer]




NAD_D_12(4FN4)
?
[Raw transfer]




NAD_B_7(4FN4)
?
[Raw transfer]




NAD_A_5(4FN4)
?
[Raw transfer]




NAP_B_5(4JRO)
?
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_B_7(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_C_9(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_D_11(2CFC)
HCDR_XANP2
[Raw transfer]




GOL_C_10(4FN4)
?
[Raw transfer]




GOL_D_13(4FN4)
?
[Raw transfer]




7 PsiBlast_PDB 85.0939% -94 - C1 -3AUS - DHG4_BACME -
4 PsiBlast_PDB 84.9939% -94 - C1 -3AY6 - DHG4_BACME -
57 PsiBlast_CBE 84.4340% -96 - C1 -4JRO - ? -
25 PsiBlast_CBE 84.0140% -93 - C1 -4URE - ? -
3 PsiBlast_PDB 83.0640% -93 - C1 -4URF - ? -
34 PsiBlast_CBE 82.9039% -96 - C1 -3AUT - DHG4_BACME -
26 PsiBlast_CBE 82.8539% -92 - C1 -3AY6 - DHG4_BACME -
9 PsiBlast_PDB 82.8439% -93 - C1 -3AUU - DHG4_BACME -
18 PsiBlast_PDB 82.8240%-101 - C1 -4JRO - ? -
67 PsiBlast_CBE 82.6536% -94 - C1 -3AWD - ? -
2 PsiBlast_PDB 82.3840% -92 - C1 -4URE - ? -
68 PsiBlast_CBE 82.3636% -93 - C1 -3AWD - ? -
29 PsiBlast_CBE 82.3039% -95 - C1 -3AY7 - DHG4_BACME -
27 PsiBlast_CBE 82.1039% -94 - C1 -3AY6 - DHG4_BACME -
69 PsiBlast_CBE 82.0236% -93 - C1 -3AWD - ? -
28 PsiBlast_CBE 82.0039% -91 - C1 -3AY6 - DHG4_BACME -
8 PsiBlast_PDB 81.8539% -92 - C1 -3AUT - DHG4_BACME -
33 PsiBlast_CBE 81.4039% -95 - C1 -3AUU - DHG4_BACME -
6 PsiBlast_PDB 81.4039% -92 - C1 -3AY7 - DHG4_BACME -
24 PsiBlast_CBE 81.3640% -91 - C1 -4URF - ? -
59 PsiBlast_CBE 79.1340% -98 - C1 -4JRO 10.1 ?
116 HHSearch 77.6536%-101 - C1 -2CFC 9.7 HCDR_XANP2
63 PsiBlast_CBE 77.2737% -91 - C1 -2CFC 8.4 HCDR_XANP2
64 PsiBlast_CBE 74.8537% -92 - C1 -2CFC 8.1 HCDR_XANP2
20 PsiBlast_PDB 74.5637% -93 - C1 -2CFC 9.9 HCDR_XANP2
1 PsiBlast_PDB 73.5140% -87 - C1 -4FN4 12.0 ?
65 PsiBlast_CBE 73.2237% -92 - C1 -2CFC 7.6 HCDR_XANP2
21 PsiBlast_CBE 72.6240% -86 - C1 -4FN4 12.1 ?
22 PsiBlast_CBE 71.7040% -87 - C1 -4FN4 12.1 ?
23 PsiBlast_CBE 71.0540% -83 - C1 -4FN4 12.2 ?