@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2193: (2016-04-01 )
MEKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPEGNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIKHQKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIADEPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTVDEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTPPDLLHPPKGDAFAARNKYAMQIDLEEEPPLFKVSDTHYAATWLLHPDAPEVTPPDAVLRRQEQFAELHPGMQAVHAKGVEVE

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_B_3(4FWI)
?
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_H_8(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ATP_H_8(2FGJ)
HLYBP_ECOLX
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




1 PsiBlast_PDB 91.9240% -94 - C1 -4FWI 5.7 ?
12 PsiBlast_PDB 76.6031%-114 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 76.0733%-114 - C1 -4U00 5.0 ?
22 PsiBlast_CBE 75.6233%-116 - C1 -4U02 - ? -
23 PsiBlast_CBE 75.4933%-111 - C1 -4U02 - ? -
11 PsiBlast_PDB 75.4031%-109 - C1 -3TUI - METN_ECOLI -
3 PsiBlast_PDB 75.0333%-108 - C1 -4U02 - ? -
38 PsiBlast_CBE 74.3131%-105 - C1 -3TUI - METN_ECOLI -
39 PsiBlast_CBE 74.2331%-107 - C1 -3TUI - METN_ECOLI -
103 HHSearch 74.1932%-112 * C1 *3TUI - METN_ECOLI -
37 PsiBlast_CBE 74.0631%-107 - C1 -3TUI - METN_ECOLI -
122 Fugue 73.8726% -89 - C1 -3TUZ - METN_ECOLI -
21 PsiBlast_CBE 73.8633%-108 - C1 -4U02 - ? -
24 PsiBlast_CBE 73.6432%-110 - C1 -3C4J 4.4 ?
35 PsiBlast_CBE 73.6331%-110 - C1 -3TUZ - METN_ECOLI -
5 PsiBlast_PDB 73.5832%-109 - C1 -2OLK 5.7 ?
34 PsiBlast_CBE 73.3531%-108 - C1 -3TUZ - METN_ECOLI -
36 PsiBlast_CBE 73.2131%-108 - C1 -3TUZ - METN_ECOLI -
30 PsiBlast_CBE 73.1532%-108 - C1 -2OLK 5.7 ?
26 PsiBlast_CBE 72.5432%-104 - C1 -2OUK - ? -
31 PsiBlast_CBE 72.4932%-105 - C1 -2OLK 5.5 ?
33 PsiBlast_CBE 72.4632%-107 - C1 -3C41 5.5 ?
4 PsiBlast_PDB 72.0032%-108 - C1 -2OLJ 5.8 ?
29 PsiBlast_CBE 71.6332%-105 - C1 -2OLK 5.6 ?
10 PsiBlast_PDB 71.3532%-102 - C1 -3C41 6.2 ?
8 PsiBlast_PDB 71.2332%-102 - C1 -3C4J 6.3 ?
7 PsiBlast_PDB 70.7032%-102 - C1 -2Q0H 4.9 ?
32 PsiBlast_CBE 70.4432%-103 - C1 -2OLJ 5.4 ?
41 PsiBlast_CBE 68.5134%-113 - C1 -4YMU 3.9 ?
16 PsiBlast_PDB 67.5034%-116 - C1 -4YMV 4.6 ?
15 PsiBlast_PDB 67.4434%-111 - C1 -4YMU 4.5 ?
40 PsiBlast_CBE 67.2434%-112 - C1 -4YMV 3.6 ?
48 PsiBlast_CBE 59.2532% -95 - C1 -1L2T 3.3 Y796_METJA
49 PsiBlast_CBE 59.0632% -89 - C1 -1L2T 5.7 Y796_METJA
47 PsiBlast_CBE 57.6833% -91 - C1 -3TIF 3.1 Y796_METJA
46 PsiBlast_CBE 57.2233% -96 - C1 -3TIF 5.0 Y796_METJA
52 PsiBlast_CBE 53.9534% -82 - C1 -2FF7 4.9
54 PsiBlast_CBE 53.3734% -85 - C1 -2PMK 5.2
62 PsiBlast_CBE 52.8933% -83 - C1 -2FGJ 3.5 HLYBP_ECOLX
63 PsiBlast_CBE 52.7333% -86 - C1 -2FGJ 6.3 HLYBP_ECOLX
67 PsiBlast_CBE 52.5833% -84 - C1 -1XEF 3.0 HLYBP_ECOLX
68 PsiBlast_CBE 52.3933% -82 - C1 -1XEF 5.8 HLYBP_ECOLX
61 PsiBlast_CBE 52.0733% -84 - C1 -2FGJ 5.4
64 PsiBlast_CBE 51.9233% -81 - C1 -2FGJ 3.5 HLYBP_ECOLX
59 PsiBlast_CBE 51.7633% -85 - C1 -2FGK 5.9 HLYBP_ECOLX
57 PsiBlast_CBE 51.7033% -86 - C1 -2FGK 3.2 HLYBP_ECOLX
65 PsiBlast_CBE 51.6833% -80 - C1 -2FFA 5.0
66 PsiBlast_CBE 51.6533% -86 - C1 -1XEF 5.8
69 PsiBlast_CBE 51.5933% -81 - C1 -1XEF 3.0 HLYBP_ECOLX
55 PsiBlast_CBE 51.2233% -81 - C1 -3B5J 5.3
56 PsiBlast_CBE 50.9033% -82 - C1 -2FGK 5.6
58 PsiBlast_CBE 50.4533% -80 - C1 -2FGK 5.7 HLYBP_ECOLX
86 PsiBlast_CBE 40.4331% -75 - C1 -5DGX 5.9 ?