Study : Lmo2198 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

Download fasta file
Download text file


Binding Site Number :C6_S1
Best Complexes choosen after comparative docking [pKd > 3] : 5 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C6_S1
Complex: TRP_A_3(2G36) / Model_20(2G36/A) = [3.9] Download1262.7247.07MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRK
Complex: TRP_A_3(2G36) / Model_63(2G36/A) = [3.9] Download1133.0047.07MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRK
Complex: ATP_B_5(1YID) / Model_38(1YID/B) = [4.0] Download1522.8133.24MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRK
Complex: TRP_A_2(3SZ3) / Model_60(3SZ3/A) = [4.2] Download713.1245.17MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRK
Complex: TRP_A_2(3SZ3) / Model_15(3SZ3/A) = [4.2] Download1068.5045.17MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRK
Consensus
[pKd Mean = 4.04]
-1140
(s=264)
43
(s=5)
MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRK