@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2198: (2016-04-01 )
MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRK

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TYM_A_10(1I6K)
SYW_GEOSE
[Raw transfer]



TYM_A_10(1I6L)
SYW_GEOSE
[Raw transfer]



TYM_A_10(1I6M)
SYW_GEOSE
[Raw transfer]



TYM_A_10(1I6K)
SYW_GEOSE
[Raw transfer]



ATP_A_4(1MAU)
SYW_GEOSE
[Raw transfer]



ATP_A_3(1M83)
SYW_GEOSE
[Raw transfer]



AQP_A_3(2OV4)
SYW_GEOSE
[Raw transfer]



GOL_A_14(1I6M)
SYW_GEOSE
[Raw transfer]



GOL_A_3(3N9I)
SYW_YERPE
[Raw transfer]



GOL_A_3(3N9I)
SYW_YERPE
[Raw transfer]



ADP_A_3(3TZL)
SYW_CAMJE
[Raw transfer]



ADP_A_3(3TZL)
SYW_CAMJE
[Raw transfer]



ATP_B_5(1YID)
SYW2_DEIRA
[Raw transfer]



TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]



TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]



TRP_A_2(3SZ3)
SYW_VIBCH
[Raw transfer]



TRP_A_2(3SZ3)
SYW_VIBCH
[Raw transfer]



ANL_A_4(2OV4)
SYW_GEOSE
[Raw transfer]
27 PsiBlast_CBE 96.3370% -96 - C6 -1MB2 - SYW_GEOSE -
1 PsiBlast_PDB 95.5672% -99 - C6 -3PRH - SYW_BACSU -
57 HHSearch 95.3472% -99 * C6 *3PRH - SYW_BACSU -
23 PsiBlast_CBE 95.2970% -97 - C6 -1MB2 - SYW_GEOSE -
29 PsiBlast_CBE 95.0870% -98 - C6 -1MAW - SYW_GEOSE -
28 PsiBlast_CBE 95.0670% -93 - C6 -1MAW - SYW_GEOSE -
25 PsiBlast_CBE 95.0170% -93 - C6 -1MB2 - SYW_GEOSE -
26 PsiBlast_CBE 94.9170% -96 - C6 -1MB2 - SYW_GEOSE -
30 PsiBlast_CBE 94.8870% -94 - C6 -1MAW - SYW_GEOSE -
24 PsiBlast_CBE 94.8070% -95 - C6 -1MB2 - SYW_GEOSE -
32 PsiBlast_CBE 94.7470% -95 - C6 -1MAW - SYW_GEOSE -
48 Fugue 94.6469% -96 - C6 -1D2R - SYW_GEOSE -
5 PsiBlast_PDB 94.6070% -94 - C6 -1MAW - SYW_GEOSE -
3 PsiBlast_PDB 94.5970% -90 - C6 -1M83 9.4 SYW_GEOSE
4 PsiBlast_PDB 94.4170% -90 - C6 -1MAU 9.8 SYW_GEOSE
6 PsiBlast_PDB 94.3770% -96 - C6 -1MB2 - SYW_GEOSE -
31 PsiBlast_CBE 94.2870% -97 - C6 -1MAW - SYW_GEOSE -
47 Fugue 94.1969% -94 - C6 -1D2R - SYW_GEOSE -
10 PsiBlast_PDB 94.1269% -94 - C6 -1D2R - SYW_GEOSE -
7 PsiBlast_PDB 94.1270% -92 - C6 -2OV4 8.7 SYW_GEOSE
2 PsiBlast_PDB 93.3270% -90 - C6 -1I6M 10.9 SYW_GEOSE
58 HHSearch 93.0870% -88 - C6 -1I6K 11.2 SYW_GEOSE
8 PsiBlast_PDB 92.5668% -89 - C6 -1I6K 11.2 SYW_GEOSE
9 PsiBlast_PDB 92.4968% -92 - C6 -1I6L 11.3 SYW_GEOSE
14 PsiBlast_PDB 88.2456% -88 - C6 -3N9I 2.2 SYW_YERPE
60 HHSearch 86.6455% -86 - C6 -3SZ3 4.2 SYW_VIBCH
15 PsiBlast_PDB 86.3954% -89 - C6 -3SZ3 4.2 SYW_VIBCH
64 HHSearch 85.4454% -86 - C6 -3N9I 2.2 SYW_YERPE
65 HHSearch 76.7439% -94 - C6 -3TZL 5.1 SYW_CAMJE
19 PsiBlast_PDB 74.3537% -88 - C6 -3TZL 5.1 SYW_CAMJE
63 HHSearch 74.2635% -87 - C6 -2G36 3.9 SYW_THEMA
20 PsiBlast_PDB 72.2434% -82 - C6 -2G36 3.9 SYW_THEMA
38 PsiBlast_CBE 67.1531% -75 - C6 -1YID 4.0 SYW2_DEIRA