@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2201: (2016-04-01 )
MDKRRVVVTGVGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVVISNSFGFGGHNATLVFKRIED

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMN_A_2(3HNZ)
FABF_ECOLI
[Raw transfer]




PMN_C_3(2GFX)
FABF_ECOLI
[Raw transfer]




840_A_2(3I8P)
FABF_ECOLI
[Raw transfer]




N3A_A_2(3HO9)
FABF_ECOLI
[Raw transfer]




P9A_A_2(3G0Y)
FABF_ECOLI
[Raw transfer]




P9C_A_2(3G11)
FABF_ECOLI
[Raw transfer]




1X9_A_6(4LS7)
FABF_BACSU
[Raw transfer]




N32_A_2(3HO2)
FABF_ECOLI
[Raw transfer]




1X9_B_10(4LS7)
FABF_BACSU
[Raw transfer]




1XG_A_3(4LS8)
FABF_BACSU
[Raw transfer]




1XG_B_10(4LS8)
FABF_BACSU
[Raw transfer]




CER_A_3(1B3N)
FABF_ECOLI
[Raw transfer]




GOL_B_9(4LS6)
FABF_BACSU
[Raw transfer]




GOL_B_10(4LS5)
FABF_BACSU
[Raw transfer]




TLG_A_6(4C6U)
?
[Raw transfer]




TLG_A_4(4C6V)
?
[Raw transfer]




TLM_A_9(2WGE)
FAB1_MYCTU
[Raw transfer]




7RD_B_15(4C71)
?
[Raw transfer]




TLH_B_23(4C73)
?
[Raw transfer]




TLG_B_25(4C72)
?
[Raw transfer]




6NA_B_5(2IWZ)
OXSM_HUMAN
[Raw transfer]




6NA_B_5(2IX4)
KASM_ARATH
[Raw transfer]




6NA_A_3(2IWZ)
OXSM_HUMAN
[Raw transfer]




TLG_A_15(4C72)
?
[Raw transfer]




TLH_A_13(4C73)
?
[Raw transfer]




6NA_A_3(2IX4)
KASM_ARATH
[Raw transfer]




DAO_C_3(2GFY)
FABF_ECOLI
[Raw transfer]




EDO_A_4(3KZU)
?
[Raw transfer]




EDO_A_5(3KZU)
?
[Raw transfer]




IPA_A_5(2WGD)
FAB1_MYCTU
[Raw transfer]




EDO_A_5(3KZU)
?
[Raw transfer]




07L_A_5(3U0F)
?
[Raw transfer]




EDO_A_4(4JGA)
?
[Raw transfer]




EDO_A_4(4JGA)
?
[Raw transfer]




3MQ_A_5(3MQD)
?
[Raw transfer]




2 PsiBlast_PDB 92.1670% -75 - C2 -4LS5 - FABF_BACSU -
23 PsiBlast_CBE 91.6770% -73 - C2 -4LS5 2.9 FABF_BACSU
24 PsiBlast_CBE 91.3170% -73 - C2 -4LS6 2.9 FABF_BACSU
22 PsiBlast_CBE 91.2470% -73 - C2 -4LS7 4.8 FABF_BACSU
5 PsiBlast_PDB 91.2170% -73 - C2 -4LS6 - FABF_BACSU -
4 PsiBlast_PDB 90.8470% -73 - C2 -4LS8 3.8 FABF_BACSU
21 PsiBlast_CBE 90.7970% -74 - C2 -4LS8 3.5 FABF_BACSU
3 PsiBlast_PDB 90.3270% -73 - C2 -4LS7 4.4 FABF_BACSU
6 PsiBlast_PDB 88.8064% -73 - C2 -2GQD - FABF_STAAC (first) -
120 HHSearch 88.7564% -73 - C2 -2GQD - FABF_STAAC (first) -
114 HHSearch 85.9856% -71 - C2 -1E5M - FABF_SYNY3 -
11 PsiBlast_PDB 85.8251% -71 - C2 -4JPF - ? -
7 PsiBlast_PDB 85.5955% -71 - C2 -1E5M - FABF_SYNY3 -
27 PsiBlast_CBE 85.3551% -70 - C2 -4B7V - ? -
9 PsiBlast_PDB 85.3252% -70 - C2 -4QAV - ? -
30 PsiBlast_CBE 84.8450% -72 - C2 -4JRH - FABF_VIBCH -
14 PsiBlast_PDB 84.8251% -67 - C2 -4JB6 - ? -
10 PsiBlast_PDB 84.7951% -68 - C2 -4B7V - ? -
8 PsiBlast_PDB 84.4753% -70 - C2 -1J3N - ? -
38 PsiBlast_CBE 84.4447% -73 - C2 -4JGA 3.0 ?
37 PsiBlast_CBE 84.2947% -72 - C2 -4JGA 3.1 ?
51 PsiBlast_CBE 83.9149% -67 - C2 -3KZU 2.9 ?
116 HHSearch 83.4050% -68 - C2 -3KZU 2.9 ?
50 PsiBlast_CBE 82.0249% -66 - C2 -3KZU 2.9 ?
34 PsiBlast_CBE 81.2749% -67 - C2 -3G11 6.8 FABF_ECOLI
33 PsiBlast_CBE 81.1249% -69 - C2 -3HO9 6.3 FABF_ECOLI
20 PsiBlast_PDB 81.1249% -68 - C2 -3HO2 6.5 FABF_ECOLI
52 PsiBlast_CBE 81.0644% -66 - C2 -2IX4 2.1 KASM_ARATH
16 PsiBlast_PDB 81.0149% -68 - C2 -1B3N 3.5 FABF_ECOLI
32 PsiBlast_CBE 80.7749% -69 - C2 -3I8P 6.2 FABF_ECOLI
45 PsiBlast_CBE 80.4945% -68 - C2 -2IWZ 2.7 OXSM_HUMAN
46 PsiBlast_CBE 80.3845% -67 - C2 -2IWZ 3.8 OXSM_HUMAN
35 PsiBlast_CBE 80.2649% -66 - C2 -3G0Y 6.7 FABF_ECOLI
19 PsiBlast_PDB 80.1149% -65 - C2 -3HNZ 6.7 FABF_ECOLI
36 PsiBlast_CBE 79.8449% -65 - C2 -2GFX 6.1 FABF_ECOLI
53 PsiBlast_CBE 79.8244% -65 - C2 -2IX4 2.0 KASM_ARATH
18 PsiBlast_PDB 79.7549% -66 - C2 -2GFY 3.6 FABF_ECOLI
66 PsiBlast_CBE 75.2740% -63 - C2 -3U0F 2.0 ?
64 PsiBlast_CBE 75.0340% -65 - C2 -3MQD 2.4 ?
70 PsiBlast_CBE 71.0837% -57 - C2 -2WGD 2.5 FAB1_MYCTU
69 PsiBlast_CBE 70.2037% -58 - C2 -2WGE 3.1 FAB1_MYCTU
73 PsiBlast_CBE 69.1637% -56 - C2 -4C72 4.1 ?
74 PsiBlast_CBE 69.0937% -56 - C2 -4C72 4.0 ?
75 PsiBlast_CBE 68.7937% -56 - C2 -4C71 5.0 ?
71 PsiBlast_CBE 68.7837% -56 - C2 -4C73 4.6 ?
67 PsiBlast_CBE 68.6337% -60 - C2 -4C6V 4.0 ?
68 PsiBlast_CBE 68.5737% -56 - C2 -4C6U 2.9 ?
72 PsiBlast_CBE 68.5437% -56 - C2 -4C73 4.3 ?