@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2206: (2016-04-01 )
MDLQKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESDFAKRVYDVAEVDTDALQKVIENTLEKIPVVSGSGVNYGQAMSQALFQLMRDAEKEQQQLEDDFVSTEHLILAVMDQKSNPITAELKNQHKAKKQIKEAILKIRGGKRVTSQNAEENYEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQILLFIDEIHTIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQYIEKDAALERRFQKVLVPEPTVEDTVSILRGLKERFEIHHGVNIHDNALVAAASLSNRYITDRFLPDKAIDLVDEACATIRVEIDSMPSELDEVTRKVMQLEIEEAALKEEKDPASERRLEILQRELADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELEEAENNYDLNKAAELRHGRIPAVEKELLELEAENREKTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYIGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEEGEISPELESDVMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDDAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEIDLADKEFTFKVTE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(4LJA)

[Raw transfer]



ACP_A_2(4LJ9)

[Raw transfer]



MNT_C_8(4LJ7)

[Raw transfer]



MNT_B_6(4LJ7)
CLPB_THET8
[Raw transfer]



ADP_A_2(4LJ5)

[Raw transfer]



MNT_A_4(4LJ7)
CLPB_THET8
[Raw transfer]



ADP_A_4(4FCV)
CLPB_THET8
[Raw transfer]



ADP_X_6(1R6B)
CLPA_ECOLI
[Raw transfer]



ADP_X_8(1KSF)
CLPA_ECOLI
[Raw transfer]



ADP_A_4(4FCW)
CLPB_THET8
[Raw transfer]



ADP_D_6(4FD2)

[Raw transfer]



ADP_A_4(4FD2)
CLPB_THET8
[Raw transfer]



ADP_B_5(4FD2)
CLPB_THET8
[Raw transfer]
154 Fugue 90.2755% -85 - C3 -1QVR - CLPB_THET8 -
129 HHSearch 79.4548% -88 - C7 -3PXI - CLPC_BACSU -
128 HHSearch 76.8040% -86 - C7 -1R6B - CLPA_ECOLI -
1 PsiBlast_PDB 76.5542% -89 - C7 -3PXI - CLPC_BACSU -
6 PsiBlast_PDB 63.1262%-100 - C5 -4LJ9 6.7
2 PsiBlast_PDB 62.5962% -75 - C8 -4HSE - CLPB_THET8 -
22 PsiBlast_CBE 62.4962%-110 - C5 -4LJ7 7.0 CLPB_THET8
7 PsiBlast_PDB 62.4862%-105 - C5 -4LJA 7.3
5 PsiBlast_PDB 62.3362%-108 - C5 -4LJ7 8.6 CLPB_THET8
3 PsiBlast_PDB 62.3162%-106 * C5 *4LJ4 - -
4 PsiBlast_PDB 62.2662%-105 - C5 -4LJ5 6.6
10 PsiBlast_PDB 61.6159%-107 - C5 -4FCW 7.4 CLPB_THET8
21 PsiBlast_CBE 61.5562%-112 - C5 -4LJ7 7.4
24 PsiBlast_CBE 60.7160%-105 - C5 -4FD2 6.1 CLPB_THET8
9 PsiBlast_PDB 60.3459%-102 - C5 -4FCV 6.5 CLPB_THET8
8 PsiBlast_PDB 60.3360%-105 - C5 -4FD2 6.5 CLPB_THET8
23 PsiBlast_CBE 60.2660%-107 - C5 -4FD2 6.0
14 PsiBlast_PDB 57.1344% -98 - C5 -1R6B 7.7 CLPA_ECOLI
13 PsiBlast_PDB 56.5344% -93 - C5 -1KSF 7.8 CLPA_ECOLI
130 HHSearch 53.2745% -63 - C7 -3PXG - CLPC_BACSU -