@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2212: (2016-04-01 )
MTKITNDLFLKAARKEQVDRIPVWYMRQAGRSQPEYRKLKEKYSLFEITHQPEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGVDVEIKSGIGPVIHNPIRSFQDVEKLTIFKPEIEVPYVLDTIKLLADDMLDVPLIGFAGAPFTLASYMIEGGPSKNYHQTKSFMYREPEVWAILMEKLGRMTANYLIAQINAGASAVQLFDSWVGALSRADYAEYIRPVIEMIVREVKAVHPTTPIIMQAVGASHLLEEWETMPLDVVGVDWRETITSARKKVPTKAIQGNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKQLTNYIHERSEILLKKDDIK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1CP_A_2(1R3Q)
DCUP_HUMAN
[Raw transfer]




1CP_A_2(1R3S)
DCUP_HUMAN
[Raw transfer]




1CP_A_2(1R3S)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(2Q71)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(1R3W)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(1R3Y)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(1R3T)
DCUP_HUMAN
[Raw transfer]




1CP_A_2(1R3V)
DCUP_HUMAN
[Raw transfer]




EDO_B_10(4ZR8)
?
[Raw transfer]




EDO_A_5(4ZR8)
?
[Raw transfer]




28 HHSearch 98.6165%-120 - C3 -2INF - DCUP_BACSU -
1 PsiBlast_PDB 97.1965%-118 - C3 -2INF - DCUP_BACSU -
10 PsiBlast_PDB 87.9136%-107 - C3 -1R3Q 9.8 DCUP_HUMAN
49 Fugue 87.7538%-103 - C3 -1J93 - DCUP_TOBAC -
16 PsiBlast_PDB 87.7136%-105 - C3 -1R3W 10.2 DCUP_HUMAN
48 Fugue 87.6538%-103 - C3 -1J93 - DCUP_TOBAC -
12 PsiBlast_PDB 87.6036%-105 - C3 -3GVQ - DCUP_HUMAN -
8 PsiBlast_PDB 87.5036%-106 - C3 -3GW0 - DCUP_HUMAN -
26 HHSearch 87.4937%-105 - C3 -1R3S 10.4 DCUP_HUMAN
19 PsiBlast_PDB 87.4536%-105 - C3 -1R3R - DCUP_HUMAN -
5 PsiBlast_PDB 87.4237%-108 - C3 -4ZR8 2.9 ?
21 PsiBlast_CBE 87.4040%-103 - C3 -4WSH - DCUP_PSEAE -
24 PsiBlast_CBE 87.3336%-107 - C3 -1R3S 10.4 DCUP_HUMAN
11 PsiBlast_PDB 87.2636%-108 - C3 -1R3Y 10.4 DCUP_HUMAN
23 PsiBlast_CBE 87.1936%-106 - C3 -1R3T 8.7 DCUP_HUMAN
20 PsiBlast_PDB 87.0336%-106 - C3 -1R3V 7.6 DCUP_HUMAN
27 HHSearch 86.9636%-103 - C3 -1J93 - DCUP_TOBAC -
47 Fugue 86.9436%-101 - C3 -1URO - DCUP_HUMAN -
2 PsiBlast_PDB 86.9440%-105 - C3 -4WSH - DCUP_PSEAE -
17 PsiBlast_PDB 86.8636%-106 - C3 -3GVV - DCUP_HUMAN -
25 PsiBlast_CBE 86.5136%-107 - C3 -2Q71 11.2 DCUP_HUMAN
22 PsiBlast_CBE 86.2337%-105 - C3 -4ZR8 2.0 ?