@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2225: (2016-04-02 )
MERIERDTLGEISVDATKYWGAQTERSKRNFAIGDNPMPIEIIYAFAQLKKATAKVNAAEGKLAEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTLGEGQIHPNDDVNMSQSSNDTFPTAMHIAAYGALVTKLLPEITKMEAVLTEKKNKYMHLVKIGRTHLQDATPLTLGQEISGWEACLTNNKNYLETSMKAILPLAIGGTAVGTGLNASRDFGDKVAEELMKQTGYPFTSDSNKYFALTSHSPINFVHGAIRSLASDLMKIANDIRLLASGPRSGIGELEIPANEPGSSIMPGKVNPTQCEAITMVAAQVMGNDVTINVAASQGNFELNVYKPVIIFNFLESIKLLADSMRSFRVHCLEGLTANEKVIETKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWINPLKMTNL

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMA_B_11(1FUP)
FUMC_ECOLI
[Raw transfer]



PMA_A_9(1FUP)
FUMC_ECOLI
[Raw transfer]



CIT_A_9(1FUO)
FUMC_ECOLI
[Raw transfer]



LMR_A_3(3RRP)
?
[Raw transfer]



CIT_A_5(2FUS)
FUMC_ECOLI
[Raw transfer]



LMR_B_5(3RRP)
?
[Raw transfer]



CIT_I_9(1KQ7)
FUMC_ECOLI
[Raw transfer]



CIT_A_4(1FUQ)
FUMC_ECOLI
[Raw transfer]



CIT_G_7(1KQ7)
FUMC_ECOLI
[Raw transfer]



CIT_B_7(2FUS)
FUMC_ECOLI
[Raw transfer]



CIT_B_6(1FUQ)
FUMC_ECOLI
[Raw transfer]



CIT_B_11(1FUO)
FUMC_ECOLI
[Raw transfer]



UNL_A_3(3TV2)
?
[Raw transfer]
26 PsiBlast_CBE 95.6856% -80 - C4 -1FUR - FUMC_ECOLI -
4 PsiBlast_PDB 95.2856% -77 - C4 -1FUQ 3.6 FUMC_ECOLI
22 PsiBlast_CBE 95.2656% -80 - C4 -1FUQ 2.8 FUMC_ECOLI
21 PsiBlast_CBE 95.2556% -79 - C4 -1FUO 3.6 FUMC_ECOLI
28 PsiBlast_CBE 95.2454% -82 - C4 -3E04 - FUMH_HUMAN -
5 PsiBlast_PDB 95.2056% -79 - C4 -1KQ7 3.5 FUMC_ECOLI
1 PsiBlast_PDB 95.1556% -79 - C4 -1FUO 3.6 FUMC_ECOLI
23 PsiBlast_CBE 95.0256% -80 - C4 -1FUP 4.6 FUMC_ECOLI
2 PsiBlast_PDB 94.9756% -78 - C4 -1YFE - FUMC_ECOLI -
3 PsiBlast_PDB 94.6656% -81 - C4 -1FUP 4.2 FUMC_ECOLI
25 PsiBlast_CBE 94.5256% -80 - C4 -2FUS 2.7 FUMC_ECOLI
65 Fugue 94.5156% -82 - C4 -1FUR - FUMC_ECOLI -
24 PsiBlast_CBE 94.4456% -78 - C4 -1KQ7 2.5 FUMC_ECOLI
6 PsiBlast_PDB 94.2156% -78 - C4 -1FUR - FUMC_ECOLI -
8 PsiBlast_PDB 94.1955% -77 - C4 -3TV2 2.8 ?
7 PsiBlast_PDB 93.8656% -79 - C4 -2FUS 3.5 FUMC_ECOLI
12 PsiBlast_PDB 93.7054% -80 - C4 -3E04 - FUMH_HUMAN -
10 PsiBlast_PDB 93.4652% -80 - C4 -4HGV - FUMC_RHIME -
11 PsiBlast_PDB 92.7053% -76 - C4 -3GTD - FUMC_RICPR -
9 PsiBlast_PDB 92.4854% -78 - C4 -1VDK - ? -
19 PsiBlast_PDB 90.0246% -72 - C4 -3RRP 2.2 ?
39 PsiBlast_CBE 88.9346% -74 - C4 -3RRP 2.3 ?