@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2227: (2016-04-02 )
MKKLEIQGLKKKYNGKWVIKGIDLTINEKECVALIGPNGAGKSTMINMIVQILTQDEGQITLDGESAKLVREKIGFLPQYPEFYGWMSATECLHFMGKLSNMEKTDLKARINEVLLLVGLEESANKKISTYSGGMRQRLGIAQAILHRPELLVLDEPVSALDPIGRREMMLLLDKLKKEITILFSTHILKDAEEICDRIAIIKNGELVADKTVVQLMEEESSPVFDVEFNGNSEAWQTLLLQNKYVEKIEKVGMVYQVYTTNQKAGSEAVLSSLLQIDGEFIRVENRHQSLEEIFMEKVGK

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4QC2)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]



GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]
79 HHSearch 95.0135%-115 - C1 -1VPL - ? -
1 PsiBlast_PDB 94.3835%-116 - C1 -1VPL - ? -
76 HHSearch 88.3031%-106 - C1 -2OLJ - ? -
64 HHSearch 86.8130% -98 - C1 -2IT1 - ? -
6 PsiBlast_PDB 85.5831%-105 - C1 -4WBS - ? -
21 PsiBlast_CBE 84.8231%-100 - C1 -4WBS - ? -
27 PsiBlast_CBE 84.5931%-111 - C1 -2OUK - ? -
15 PsiBlast_PDB 84.2931%-112 - C1 -2OLJ - ? -
9 PsiBlast_PDB 84.1830%-109 - C1 -4RVC - ? -
19 PsiBlast_PDB 84.0931%-107 - C1 -3C4J - ? -
24 PsiBlast_CBE 83.9431%-110 - C1 -3C4J - ? -
69 HHSearch 83.7430%-104 * C1 *3TUI - METN_ECOLI -
5 PsiBlast_PDB 83.7130% -96 - C1 -4P33 2.7 LPTB_ECOLI
59 Fugue 83.6924% -76 - C1 -4F4C - PGP1_CAEEL -
72 HHSearch 83.3829%-109 - C1 -3GFO - ECFA3_CLOP1 -
29 PsiBlast_CBE 83.3031%-106 - C1 -2OLK - ? -
30 PsiBlast_CBE 83.2731%-113 - C1 -2OLK - ? -
53 Fugue 83.1425% -88 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 83.1330% -91 - C1 -4QC2 7.1 ?
17 PsiBlast_PDB 83.0931%-115 - C1 -2OUK - ? -
14 PsiBlast_PDB 82.9031%-108 - C1 -3C41 6.7 ?
36 PsiBlast_CBE 82.7231%-115 - C1 -4YMU 5.9 ?
4 PsiBlast_PDB 81.8430%-101 - C1 -4P32 6.3 LPTB_ECOLI
41 PsiBlast_CBE 76.6133%-114 - C1 -1L2T 5.2 Y796_METJA
42 PsiBlast_CBE 76.5933%-110 - C1 -1L2T 5.2 Y796_METJA
43 PsiBlast_CBE 76.2433%-115 - C1 -3TIF 5.0 Y796_METJA
44 PsiBlast_CBE 74.6933%-112 - C1 -3TIF 4.8 Y796_METJA
7 PsiBlast_PDB 54.1130% -6 - C1 -4P31 6.3 LPTB_ECOLI