@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2229: (2016-04-02 )
MDKFKQQLIKYLKLFFGFIGKWLNKGWQKFRRFWKNKHIGKIFLLAGLVFLLSFIIYLVIVAKSADIDALKKGLESATIIYDKDGDKAGELSSTDATFVSIDKISKNLQNAVVSIEDRKFYEHKGFDLKGIARAGVNLVTSGGISGGGSTITQQLAKNALLTQEQTFTRKAKEIFMAREIEKTYSKDEIMEMYLNRSYFGNGEWGVENASLKYFGKSAADLNIPEAATIAGLLQAPSAYDPYQHIDKATNRRNMVLNAMVETGTISKAEGDKYKATKIVLNDQSKDPLANKYPWYVDAVINEAVNEADITQDEIMQKGYKIYTELDQNYQTSLENVYNNDGLFPSNANDGTLVQSGAVLMDPATGGIRALVGGRGEHVFRGFNRATQMKAQPGSTMKPLAVYTPALQSGYDVDSMLKDEKITYKGNYTPTNVGGVYSGEVPMYKAVANSINAPAVWLLDQIGIDKGVKSVEKFGITVPEKDRTLGLALGGMSKGASPVEMATAYATFANNGAKPESHIITKIVDPSGNTVYENVPKTKQIISETVSNEMTSMLLDVINTGTGQSAAVSGHEMAGKTGSTQVPFDDTSGTKDQWFVGYTPNLVGAVWMGYDKTDKEHYLTTTSSAGVSSLAHYVMNSGLQYQKSADFSTKSAAQETAAKKEEEEKEKNSGSDFWSGVKEKADEAGETIKKGADKVKEFGGKVSDGIGNLIDSIGN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AIX_B_3(3ZG8)
?
[Raw transfer]




CB9_B_3(3ZGA)
?
[Raw transfer]




DXF_A_3(3ZG9)
?
[Raw transfer]




DXF_A_3(3ZG9)
?
[Raw transfer]




2 PsiBlast_PDB 97.02100% -62 - C1 -3ZGA 5.2 ?
1 PsiBlast_PDB 96.66100% -63 - C1 -3ZG8 3.6 ?
28 HHSearch 96.45100% -63 - C1 -3ZG9 3.8 ?
3 PsiBlast_PDB 96.45100% -63 - C1 -3ZG9 3.8 ?
4 PsiBlast_PDB 90.7596% -5 - C- -3ZG7 - ? -
27 HHSearch 76.7430% -47 * C1 *2OLV - ? -
6 PsiBlast_PDB 73.5231% -40 - C1 -2OLV - ? -
23 PsiBlast_CBE 73.2532% -36 - C1 -3DWK - ? -
22 PsiBlast_CBE 72.6632% -36 - C1 -3DWK - ? -
53 Fugue 72.3632% -36 - C1 -3UDI - ? -
5 PsiBlast_PDB 72.1031% -43 - C1 -2OLU - ? -
21 PsiBlast_CBE 70.8132% -36 - C1 -3DWK - ? -
50 Fugue 69.6028% -29 - C1 -2OLU - ? -
7 PsiBlast_PDB 64.0329% -38 - C1 -3FWL - PBPB_ECOLI -
35 HHSearch 56.6528% -35 - C1 -2V2F - ? -
18 PsiBlast_PDB 56.3130% -41 - C1 -2C6W - ? -
17 PsiBlast_PDB 56.0130% -42 - C1 -2ZC6 - ? -
19 PsiBlast_PDB 55.0430% -42 - C1 -2C5W - ? -
33 HHSearch 54.9827% -22 - C1 -2Y2M - ? -
20 PsiBlast_PDB 54.6130% -36 - C1 -2V2F - ? -