@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2247: (2016-04-02 )
LTKTLQDRMILPGNGTIPYIGLGVFQVTEQEFIAGAVEKAIEVGYRLFDTAAVYNNEAIVGQAIASSAVSREELFISSKVWNGDLGYDETLFAFERTLRNLKLDYLDLYLIHWPVAGKYRDSWRAMERLHDEKLIKSIGVANFKQHHLSDLLVAANEKPVLNQVETHPLLPQNDLRKYLVEQNIAHAAWSPLAKGILMQNPVITEIAKKHQASVDQVILQWHLNRNTIIFPKSITSSRIEENSRLSYFQLDASDMEKIDRLETGKRVGPDPDDLEYFLSSIERERAYLASENEE

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_6(3WBW)
?
[Raw transfer]




NDP_B_4(4G5D)
PGFS_LEIMA
[Raw transfer]




NAP_A_2(4GA8)
AK1BA_HUMAN
[Raw transfer]




NAP_A_3(3H4G)
AK1A1_PIG
[Raw transfer]




NAP_A_3(1VP5)
?
[Raw transfer]




NAP_A_2(3H7U)
AKRC9_ARATH
[Raw transfer]




NAP_A_2(4GAB)
AK1BA_HUMAN
[Raw transfer]




NAP_B_2(1A80)
DKGA_CORSC
[Raw transfer]




NAP_A_3(4GIE)
PGFS_TRYCC
[Raw transfer]




NDP_B_4(3D3F)
GR_BACSU
[Raw transfer]




NAP_A_6(3CV7)
AK1A1_PIG
[Raw transfer]




NAP_A_2(3H7U)
AKRC9_ARATH
[Raw transfer]




NAP_A_3(1VP5)
?
[Raw transfer]




NAP_A_5(3FX4)
AK1A1_PIG
[Raw transfer]




NDP_A_3(4G5D)
PGFS_LEIMA
[Raw transfer]




NAP_B_4(1VP5)
?
[Raw transfer]




NDP_A_4(3WBW)
?
[Raw transfer]




NAP_X_2(1ZUA)
AK1BA_HUMAN
[Raw transfer]




NDP_A_4(3WBW)
?
[Raw transfer]




NAP_B_4(3QKZ)
ALD1_RAT
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_A_3(4GQ0)
AK1BA_HUMAN
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_D_4(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_A_2(4GQG)
AK1BA_HUMAN
[Raw transfer]




NAP_A_3(3QKZ)
ALD1_RAT
[Raw transfer]




EDO_A_10(4F40)
PGFS_LEIMA
[Raw transfer]




EDO_B_20(4F40)
PGFS_LEIMA
[Raw transfer]




NAP_A_3(4JIH)
AK1BA_HUMAN
[Raw transfer]




EDO_A_3(4GAC)
AK1A1_MOUSE
[Raw transfer]




NAP_X_2(4JII)
AK1BA_HUMAN
[Raw transfer]




NAP_A_3(4I5X)
AK1BA_HUMAN
[Raw transfer]




NAP_A_3(3KRB)
?
[Raw transfer]




NAP_B_4(3O3R)
ALD1_RAT
[Raw transfer]




NAP_B_7(3KRB)
?
[Raw transfer]




GLU_A_3(4FZI)
PGFS_TRYCC
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




GOL_H_8(1MZR)
DKGA_ECOLI
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




GLU_B_4(4FZI)
PGFS_TRYCC
[Raw transfer]




NAP_A_3(3O3R)
ALD1_RAT
[Raw transfer]




GOL_I_9(1MZR)
DKGA_ECOLI
[Raw transfer]




GOL_I_9(1MZR)
DKGA_ECOLI
[Raw transfer]




CIT_E_5(1VBJ)
PGFS_TRYBB
[Raw transfer]




CIT_F_6(1VBJ)
PGFS_TRYBB
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




C2U_A_7(3CV7)
AK1A1_PIG
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




IMN_B_9(4JQ4)
AK1C2_HUMAN
[Raw transfer]




EDO_A_12(4F40)
PGFS_LEIMA
[Raw transfer]




FLC_B_6(4GAC)
AK1A1_MOUSE
[Raw transfer]




24 PsiBlast_CBE 94.0951% -90 - C9 -3F7J - GR_BACSU -
2 PsiBlast_PDB 93.7952% -87 - C9 -3D3F - GR_BACSU -
22 PsiBlast_CBE 93.5951% -92 - C9 -3B3D - YTBE_BACSU -
21 PsiBlast_CBE 93.5051% -91 - C9 -3B3D - YTBE_BACSU -
3 PsiBlast_PDB 93.5051% -90 - C9 -3F7J - GR_BACSU -
102 HHSearch 93.4652% -90 - C9 -3F7J - GR_BACSU -
1 PsiBlast_PDB 92.6051% -91 - C9 -3B3D - YTBE_BACSU -
23 PsiBlast_CBE 92.2752% -90 - C9 -3D3F 8.6 GR_BACSU
105 HHSearch 92.1353% -90 - C9 -3B3D - YTBE_BACSU -
26 PsiBlast_CBE 90.6245% -87 - C9 -4G5D 11.9 PGFS_LEIMA
7 PsiBlast_PDB 90.2845% -87 - C9 -4G5D 11.7 PGFS_LEIMA
6 PsiBlast_PDB 90.0045% -88 - C9 -4F40 2.4 PGFS_LEIMA
36 PsiBlast_CBE 89.9841% -91 - C9 -4Q3M - ? -
27 PsiBlast_CBE 89.7945% -90 - C9 -4F40 2.6 PGFS_LEIMA
4 PsiBlast_PDB 89.7646% -90 - C9 -4FZI 2.5 PGFS_TRYCC
34 PsiBlast_CBE 89.7241% -88 - C9 -4Q3M - ? -
101 HHSearch 89.4143% -93 - C9 -1VBJ 11.1 PGFS_TRYBB
5 PsiBlast_PDB 89.4046% -88 - C9 -4GIE 11.5 PGFS_TRYCC
8 PsiBlast_PDB 89.2742% -94 - C9 -1VBJ 11.1 PGFS_TRYBB
119 HHSearch 89.2643% -90 - C9 -1MZR 2.8 DKGA_ECOLI
28 PsiBlast_CBE 89.0242% -87 - C9 -1VBJ 9.9 PGFS_TRYBB
45 PsiBlast_CBE 88.3939% -96 - C9 -4JII 12.7 AK1BA_HUMAN
50 PsiBlast_CBE 88.1839% -94 - C9 -4GAB 12.8 AK1BA_HUMAN
51 PsiBlast_CBE 88.0239% -92 - C9 -4GA8 11.0 AK1BA_HUMAN
104 HHSearch 87.9642% -93 - C9 -3O0K 2.7 ?
44 PsiBlast_CBE 87.9439% -93 - C9 -4I5X 10.3 AK1BA_HUMAN
65 PsiBlast_CBE 87.9333% -95 - C9 -3KRB 7.7 ?
48 PsiBlast_CBE 87.9339% -95 - C9 -4JIH 10.5 AK1BA_HUMAN
49 PsiBlast_CBE 87.9239% -94 - C9 -1ZUA 8.7 AK1BA_HUMAN
25 PsiBlast_CBE 87.9246% -92 - C9 -4FZI 2.3 PGFS_TRYCC
10 PsiBlast_PDB 87.7645% -90 - C9 -1MZR 2.8 DKGA_ECOLI
46 PsiBlast_CBE 87.7439% -92 - C9 -4GQG 11.9 AK1BA_HUMAN
64 PsiBlast_CBE 87.3133% -93 - C9 -3KRB 7.8 ?
47 PsiBlast_CBE 87.2239% -95 - C9 -4GQ0 12.9 AK1BA_HUMAN (first)
109 HHSearch 86.8539% -93 - C9 -3WBW 8.6 ?
30 PsiBlast_CBE 86.6944% -93 - C9 -3O0K 2.9 ?
9 PsiBlast_PDB 86.6644% -93 - C9 -3O0K 2.7 ?
111 HHSearch 86.2840% -90 - C9 -1VP5 12.4 ?
42 PsiBlast_CBE 86.0639% -91 - C9 -1VP5 12.1 ?
114 HHSearch 86.0435% -87 - C9 -3H7U 7.6 AKRC9_ARATH
54 PsiBlast_CBE 85.7234% -93 - C9 -3CV7 9.1 AK1A1_PIG
52 PsiBlast_CBE 85.7234% -92 - C9 -3H4G 7.1 AK1A1_PIG
31 PsiBlast_CBE 85.6244% -96 - C9 -3O0K 2.7 ?
17 PsiBlast_PDB 85.4139% -91 - C9 -1VP5 12.3 ?
53 PsiBlast_CBE 85.1034% -92 - C9 -3FX4 9.9 AK1A1_PIG
12 PsiBlast_PDB 84.8839% -91 - C9 -3WBW 8.6 ?
60 PsiBlast_CBE 84.5737% -85 - C9 -1A80 10.0 DKGA_CORSC
29 PsiBlast_CBE 84.5044% -95 - C9 -3O0K 2.8 ?
57 PsiBlast_CBE 84.4834% -92 - C9 -4GAC 2.6 AK1A1_MOUSE
39 PsiBlast_CBE 84.4139% -92 - C9 -3WBW 8.1 ?
56 PsiBlast_CBE 84.3734% -97 - C9 -4GAC 3.3 AK1A1_MOUSE
67 PsiBlast_CBE 84.3438% -87 - C9 -3O3R 8.8 ALD1_RAT
62 PsiBlast_CBE 84.1938% -92 - C9 -3QKZ 12.3 ALD1_RAT
63 PsiBlast_CBE 83.9938% -89 - C9 -3QKZ 10.9 ALD1_RAT
66 PsiBlast_CBE 83.7338% -91 - C9 -3O3R 11.0 ALD1_RAT
75 PsiBlast_CBE 83.3934% -95 - C9 -4JQ4 2.7 AK1C2_HUMAN
68 PsiBlast_CBE 81.6635% -99 - C9 -3H7U 9.1 AKRC9_ARATH