@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2340: (2016-04-02 )
MKNYLSLSEEVKQAKAEGKAIVALESTIISHGMPYPQNVEMARDVEQIIRDNGAVPATIALIDGKIKIGLSDEELELFAKSSNVAKVSRRDIGYLIATKQLGATTVAATMICAELAEIGIFVTGGIGGVHRGAETTMDVSADLEELAKTNVAVVCAGAKSILDLNLTMEYLETKGVPVIGYQTDVLPAFYTRSSDVELTLRADTPEVIAESLKAKWDLQIEGGAVITNPIPEEFAMDEKVINDVIQTALKEAEENHIHGKDVTPFLLGKVKELTDGKSLEANIELVKHNALIGTQIAVAYQNI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSU_A_4(4GIM)
PSUG_ECOLI
[Raw transfer]




PSU_C_8(4GIM)
PSUG_ECOLI
[Raw transfer]




PSU_B_6(4GIM)
PSUG_ECOLI
[Raw transfer]




KPS_A_5(4GIL)
PSUG_ECOLI
[Raw transfer]




KPS_B_6(4GIL)
PSUG_ECOLI
[Raw transfer]




KPS_C_8(4GIL)
PSUG_ECOLI
[Raw transfer]




R5P_B_6(4GIK)
PSUG_ECOLI
[Raw transfer]




R5P_C_8(4GIK)
PSUG_ECOLI
[Raw transfer]




R5P_A_4(4GIK)
PSUG_ECOLI
[Raw transfer]




5RP_A_3(4EX9)
?
[Raw transfer]




17 PsiBlast_CBE 99.4158%-101 - C4 -4GIK 3.0 PSUG_ECOLI
18 PsiBlast_CBE 99.3858%-104 - C4 -4GIJ - PSUG_ECOLI -
1 PsiBlast_PDB 98.9658%-105 - C4 -4GIJ - PSUG_ECOLI -
3 PsiBlast_PDB 98.7058%-103 - C4 -4GIL 2.8 PSUG_ECOLI
15 PsiBlast_CBE 98.4558%-100 - C4 -4GIL 3.0 PSUG_ECOLI
14 PsiBlast_CBE 98.3958%-101 - C4 -4GIL 2.6 PSUG_ECOLI
19 PsiBlast_CBE 98.0957%-104 - C4 -4GIM 3.2 PSUG_ECOLI
20 PsiBlast_CBE 97.9357%-102 - C4 -4GIM 3.6 PSUG_ECOLI
2 PsiBlast_PDB 97.9158%-102 - C4 -4GIK 2.6 PSUG_ECOLI
16 PsiBlast_CBE 97.6958%-103 - C4 -4GIK 2.8 PSUG_ECOLI
4 PsiBlast_PDB 97.3757%-101 - C4 -4GIM 3.6 PSUG_ECOLI
5 PsiBlast_PDB 90.2741%-103 - C4 -4EX8 - ? -
6 PsiBlast_PDB 90.0441%-103 - C4 -4EX9 2.5 ?
25 HHSearch 80.1835% -96 - C4 -1VKM - PSUG_THEMA -
7 PsiBlast_PDB 78.9836% -95 - C4 -1VKM - PSUG_THEMA -
51 Fugue 47.1619% -22 * C5 *4N5H - ? -
47 Fugue 42.1521% -45 - C5 -4C2E - CTPB_BACSU -
46 Fugue 41.0218% -41 - C1 -3G8Q - CDAT8_METKA -
50 Fugue 38.2815% -18 - C5 -4BVA - CRYM_MOUSE -
12 PsiBlast_PDB 35.4420% -69 - C4 -4PZ0 - ? -