@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2346: (2016-04-02 )
MITIKNIQKSFGENKVLKGIDLTVKKGEVVTILGPSGSGKTTFLRCLNLLERPENGEISMHDQIINCKKPSKKEVLQLRKNTAMVFQQYNLFSHKTVIQNVMEGLTVARKIPKKIAHEIAERELTKVGLADKLSAYPSQLSGGQKQRVGIARALAINPDVILFDEPTAALDPELVGEVLEVMLEIARAGATMIVVTHEMEFAKRVADQVVFMDGGLIVEQGTPDEVFNHTKEERTKRFLHRVSADYLYEIKEVKKERVI

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_6(4YMV)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ATP_H_8(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_G_7(2FGK)

[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




12 PsiBlast_PDB 95.7852%-104 - C1 -4U00 6.0 ?
22 PsiBlast_CBE 94.8554%-113 - C1 -4YMU 6.1 ?
35 PsiBlast_CBE 94.7052%-104 - C1 -4U02 - ? -
13 PsiBlast_PDB 94.3852%-104 - C1 -4U02 - ? -
21 PsiBlast_CBE 93.9554%-110 - C1 -4YMV 6.4 ?
34 PsiBlast_CBE 93.9052%-106 - C1 -4U02 - ? -
117 HHSearch 93.6749%-108 - C1 -1B0U 6.2 HISP_SALTY
4 PsiBlast_PDB 93.6754%-110 - C1 -4YMV 5.5 ?
2 PsiBlast_PDB 93.3654%-109 - C1 -4YMT - ? -
1 PsiBlast_PDB 93.3354%-110 - C1 -4YMS - ? -
3 PsiBlast_PDB 93.2154%-111 - C1 -4YMU 6.5 ?
9 PsiBlast_PDB 93.0953%-107 - C1 -2OUK - ? -
33 PsiBlast_CBE 93.0652%-102 - C1 -4U02 - ? -
30 PsiBlast_CBE 92.3453%-104 - C1 -2OLK 6.0 ?
24 PsiBlast_CBE 92.3453%-109 - C1 -3C4J 5.0 ?
27 PsiBlast_CBE 92.1453%-103 - C1 -2OUK - ? -
5 PsiBlast_PDB 92.1054%-109 - C1 -4YMW - ? -
31 PsiBlast_CBE 91.4653%-104 - C1 -2OLK 6.1 ?
29 PsiBlast_CBE 91.1453%-102 - C1 -2OLK 6.1 ?
14 PsiBlast_PDB 91.1247%-106 - C1 -1B0U 6.2 HISP_SALTY
7 PsiBlast_PDB 91.1053%-109 - C1 -2OLJ 5.7 ?
8 PsiBlast_PDB 90.8853%-102 - C1 -2OLK 6.1 ?
23 PsiBlast_CBE 90.7253%-108 - C1 -3C41 6.1 ?
6 PsiBlast_PDB 90.6753%-101 - C1 -3C41 6.4 ?
11 PsiBlast_PDB 89.6553%-102 - C1 -3C4J 6.7 ?
32 PsiBlast_CBE 89.3353%-102 - C1 -2OLJ 5.9 ?
25 PsiBlast_CBE 89.0153%-106 - C1 -2Q0H 5.9 ?
10 PsiBlast_PDB 88.8853%-102 - C1 -2Q0H 5.6 ?
113 HHSearch 86.3553%-108 - C1 -2OLJ 5.0 ?
130 Fugue 79.8544%-113 - C1 -1B0U 5.8 HISP_SALTY
89 PsiBlast_CBE 70.4636% -99 - C1 -3FVQ 3.8 FBPC_NEIG1
90 PsiBlast_CBE 68.9436% -98 - C1 -3FVQ 3.9 FBPC_NEIG1
108 HHSearch 65.6335% -91 - C1 -3FVQ 3.9 FBPC_NEIG1
46 PsiBlast_CBE 64.6235% -99 - C1 -1VCI 4.3 ?
92 PsiBlast_CBE 63.0939% -99 - C1 -4MKI 2.3 ECFA2_CALS4
78 PsiBlast_CBE 62.7635%-106 - C1 -3TIF 4.0 Y796_METJA
76 PsiBlast_CBE 61.9535%-107 - C1 -1L2T 3.6 Y796_METJA
97 PsiBlast_CBE 61.5732% -87 - C1 -2FGK 3.1
77 PsiBlast_CBE 61.5635%-108 - C1 -3TIF 6.3 Y796_METJA
99 PsiBlast_CBE 60.7932% -87 - C1 -2FGK 3.1 HLYBP_ECOLX
75 PsiBlast_CBE 60.7735%-107 - C1 -1L2T 6.5 Y796_METJA
100 PsiBlast_CBE 58.6732% -83 - C1 -2FGK 4.0 HLYBP_ECOLX
98 PsiBlast_CBE 57.3632% -85 - C1 -2FGK 3.1 HLYBP_ECOLX