@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2372: (2016-04-03 )
METLLSFEKVYKDYPSGPSIIHALKETNFEAKKGELIAIVGPSGSGKSTLLSLAGALLTPTGGTISINGKSVGNLSSKEQTALRLEEIGFIFQAAHLVPYLHVKDQISFIGKMAGKSAAELEKDTASLLSQLGISDRANFYPKDLSGGQKQRVAIARALINQPSVILADEPTASLDTERSREVVELIRNEVVQTSRTAIMVTHDERMLDLVNHVYRMEDGILTQES

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




21 PsiBlast_CBE 96.8438%-101 - C1 -1L2T 6.7 Y796_METJA
1 PsiBlast_PDB 94.6238% -98 - C1 -1L2T - Y796_METJA -
3 PsiBlast_PDB 94.1138% -91 * C1 *1F3O 6.0 Y796_METJA
22 PsiBlast_CBE 93.3338%-102 - C1 -3TIF 6.5 Y796_METJA
2 PsiBlast_PDB 92.2338% -99 - C1 -3TIF - Y796_METJA -
115 Fugue 91.1835% -89 - C1 -1Z47 - ? -
139 HHSearch 90.5637% -96 - C1 -3TIF - Y796_METJA -
135 HHSearch 88.4737% -87 - C1 -2PCJ - LOLD_AQUAE -
4 PsiBlast_PDB 88.0138%-100 - C1 -2PCJ - LOLD_AQUAE -
5 PsiBlast_PDB 87.0838%-102 - C1 -2PCL - LOLD_AQUAE -
11 PsiBlast_PDB 85.8634% -91 - C1 -1Z47 - ? -
26 PsiBlast_CBE 85.3334% -89 - C1 -1Z47 - ? -
25 PsiBlast_CBE 83.9138%-102 - C1 -4YMU 5.8 ?
122 HHSearch 83.7434% -87 - C1 -1Z47 - ? -
10 PsiBlast_PDB 83.1438%-102 - C1 -4YMW - ? -
8 PsiBlast_PDB 82.0438%-100 - C1 -4YMU 5.7 ?
6 PsiBlast_PDB 81.9738%-103 - C1 -4YMS - ? -
24 PsiBlast_CBE 81.7638% -98 - C1 -4YMV 5.2 ?
9 PsiBlast_PDB 81.6738%-102 - C1 -4YMV 5.8 ?
7 PsiBlast_PDB 81.0638%-101 - C1 -4YMT - ? -
111 PsiBlast_CBE 77.5031% -84 - C1 -3NHB 6.4
12 PsiBlast_PDB 73.2238% -91 - C1 -4U00 6.3 ?
102 PsiBlast_CBE 71.3834% -87 - C1 -3FVQ 5.6 FBPC_NEIG1
103 PsiBlast_CBE 70.4234% -89 - C1 -3FVQ 4.6 FBPC_NEIG1
49 PsiBlast_CBE 69.1838% -95 - C1 -2OLK 4.5 ?
38 PsiBlast_CBE 68.9038%-100 - C1 -3C4J 3.3 ?
37 PsiBlast_CBE 67.8138% -92 - C1 -3C41 4.3 ?
40 PsiBlast_CBE 67.3738% -91 - C1 -2Q0H 4.4 ?
41 PsiBlast_CBE 67.1738% -92 - C1 -2Q0H 3.4 ?
20 PsiBlast_PDB 66.9138% -91 - C1 -2OLJ 4.1 ?
46 PsiBlast_CBE 66.9038% -95 - C1 -2OLK 4.2 ?
48 PsiBlast_CBE 66.8638% -93 - C1 -2OLK 4.2 ?
19 PsiBlast_PDB 66.2638% -93 - C1 -3C41 5.5 ?
50 PsiBlast_CBE 65.9538% -89 - C1 -2OLJ 3.9 ?
47 PsiBlast_CBE 65.9038% -88 - C1 -2OLK 4.4 ?
39 PsiBlast_CBE 64.7638% -90 - C1 -3C4J 5.1 ?
105 PsiBlast_CBE 63.2833% -89 - C1 -4MKI 2.1 ECFA2_CALS4
106 PsiBlast_CBE 63.0333% -83 - C1 -4MKI 2.0 ECFA2_CALS4
77 PsiBlast_CBE 61.2234% -92 - C1 -1VCI 3.0 ?