@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2415: (2016-04-03 )
MATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTQGTITLDGEDVLEMEVDERARAGLFLAMQYPSEISGVTNAEFIRAAINSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLLMIEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHVMMQGKVVKEGGPELAKRLEAEGYDWIKQELGIELEEEEAVDQQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_4(2D2F)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




MES_C_5(2ZU0)
SUFC_ECOLI
[Raw transfer]




55 HHSearch 96.9261%-112 - C1 -2D2E - ? -
2 PsiBlast_PDB 96.6160%-108 - C1 -2D2F 5.5 ?
1 PsiBlast_PDB 96.1760%-112 - C1 -2D2E - ? -
4 PsiBlast_PDB 90.3151%-101 - C1 -2ZU0 1.9 SUFC_ECOLI
3 PsiBlast_PDB 87.0151%-101 - C1 -2D3W - SUFC_ECOLI -
6 PsiBlast_PDB 66.9527% -94 - C1 -4WBS - ? -
7 PsiBlast_PDB 64.0029% -89 - C1 -4YMS - ? -
62 HHSearch 63.5426% -78 - C1 -1B0U - HISP_SALTY -
8 PsiBlast_PDB 63.4329% -95 - C1 -4YMT - ? -
9 PsiBlast_PDB 63.0329% -93 - C1 -4YMU 5.4 ?
11 PsiBlast_PDB 62.0829% -93 - C1 -4YMW - ? -
10 PsiBlast_PDB 62.0129% -89 - C1 -4YMV 4.7 ?
5 PsiBlast_PDB 61.4128% -84 - C1 -1VPL - ? -
48 HHSearch 60.7922% -89 - C1 -1V43 - ? -
65 HHSearch 60.7425% -88 - C1 -1G6H 5.4 LIVG_METJA
46 HHSearch 59.9527% -85 - C1 -2IT1 - ? -
37 Fugue 59.7623% -77 - C1 -1B0U - HISP_SALTY -
63 HHSearch 57.7325% -85 - C1 -2OLJ - ? -
61 HHSearch 57.0425% -82 - C1 -1JI0 - ? -
49 HHSearch 56.9023% -82 - C1 -3RLF - MALK_ECOLI -