@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2419: (2016-04-03 )
MITLQNVVKEYTSRNNKVLAVDHVDLEIEQGEIFGVVGYSGAGKSTLIRMFNGLELPSAGTVEVDNLLISQIRGSKLRKARQQIGMIFQHFNLLWSRTVAENIAFPLEIAGVRGEKRRFRVNELIRLVGLEGKENAYPAELSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDEVLELLLDINKRLNLTIIVITHEMHVIRKICNRVAVMENGKVVELGDVLDVFRHPQEKVTQRFVRQVTDSDETEELIHLLLDNYAEGKIVKLLFMSENATQPVISQVAKENDVMLNVLHGNLTQTQNGAYGTLYVQVLGTEDAINASLTQLRQLKVETEVLER

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_H_8(2FGK)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




3 PsiBlast_PDB 93.8044%-116 - C1 -3TUZ - METN_ECOLI -
124 Fugue 92.4444%-119 - C1 -3TUZ - METN_ECOLI -
23 PsiBlast_CBE 92.3644%-118 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 92.3544%-113 - C1 -3TUI - METN_ECOLI -
25 PsiBlast_CBE 92.0144%-114 - C1 -3TUI - METN_ECOLI -
21 PsiBlast_CBE 91.9244%-119 - C1 -3TUZ - METN_ECOLI -
24 PsiBlast_CBE 91.8844%-118 - C1 -3TUI - METN_ECOLI -
26 PsiBlast_CBE 91.1844%-116 - C1 -3TUI - METN_ECOLI -
103 HHSearch 91.1745%-107 - C1 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 90.8444%-112 - C1 -3TUZ - METN_ECOLI -
1 PsiBlast_PDB 87.8745%-106 - C1 -3DHW - METN_ECOLI -
125 Fugue 69.8731% -97 - C1 -1OXS - ? -
17 PsiBlast_PDB 68.0038%-108 - C1 -4YMS - ? -
20 PsiBlast_PDB 67.5638%-104 - C1 -4YMV - ? -
44 PsiBlast_CBE 67.5138%-104 - C1 -4YMV - ? -
18 PsiBlast_PDB 67.1238%-108 - C1 -4YMT - ? -
19 PsiBlast_PDB 66.6738%-106 - C1 -4YMU - ? -
45 PsiBlast_CBE 66.3938%-107 - C1 -4YMU - ? -
109 HHSearch 66.2737%-108 - C1 -1OXX - ? -
10 PsiBlast_PDB 65.6240%-115 - C1 -2OUK - ? -
121 HHSearch 65.3838%-107 - C1 -1B0U 5.7 HISP_SALTY
56 PsiBlast_CBE 64.3539%-107 - C1 -1B0U 4.2 HISP_SALTY
49 PsiBlast_CBE 62.5738%-121 - C1 -3TIF 3.8 Y796_METJA
119 HHSearch 62.2940%-107 * C1 *2OLJ 6.1 ?
87 PsiBlast_CBE 59.7333%-103 - C1 -1VCI 4.0 ?
100 PsiBlast_CBE 53.9033% -97 - C1 -2FGJ 7.5 HLYBP_ECOLX
102 PsiBlast_CBE 52.9433% -95 - C1 -1XEF 7.5
97 PsiBlast_CBE 52.7933% -99 - C1 -2FGJ 7.4
90 PsiBlast_CBE 52.2534% -98 - C1 -2PMK 7.3
98 PsiBlast_CBE 52.1533% -98 - C1 -2FGJ 7.3 HLYBP_ECOLX
99 PsiBlast_CBE 52.0233% -98 - C1 -2FGJ 7.8 HLYBP_ECOLX
94 PsiBlast_CBE 51.8733% -96 - C1 -2FGK 7.6 HLYBP_ECOLX
88 PsiBlast_CBE 51.7534% -99 - C1 -2FF7 6.8
92 PsiBlast_CBE 51.6633% -95 - C1 -2FGK 7.7
101 PsiBlast_CBE 51.4033% -96 - C1 -2FFA 6.8
91 PsiBlast_CBE 51.1533% -95 - C1 -3B5J 7.2
95 PsiBlast_CBE 51.1133% -96 - C1 -2FGK 7.4 HLYBP_ECOLX
93 PsiBlast_CBE 51.0233% -97 - C1 -2FGK 6.6 HLYBP_ECOLX