@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2429: (2016-04-03 )
MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKSTMLRLMMRLLTPDSGEILLNEKNITEIPSKDLAKKMTMLSQAPEGLVDVMVHDLVAYGRLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTPILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQLVKDGSPREVFTTELLRDVFHITADITEKDGKQHIHPLASTRFEY

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




21 PsiBlast_CBE 90.0535%-131 - C1 -4G1U - HMUV_YERPE -
1 PsiBlast_PDB 89.4635%-130 - C1 -4G1U - HMUV_YERPE -
23 PsiBlast_CBE 83.9232%-120 - C1 -4MKI 2.1 ECFA2_CALS4
5 PsiBlast_PDB 82.6632%-120 - C1 -4MKI 2.3 ECFA2_CALS4
75 Fugue 80.3828%-100 - C1 -1Z47 - ? -
96 HHSearch 79.4130%-119 - C1 -3GFO - ECFA3_CLOP1 -
99 HHSearch 77.7629%-103 - C1 -2OLJ - ? -
2 PsiBlast_PDB 77.5032%-136 - C1 -3GFO - ECFA3_CLOP1 -
82 HHSearch 76.9832%-109 - C1 -1Z47 - ? -
35 PsiBlast_CBE 76.0031%-115 - C1 -2OUK - ? -
43 PsiBlast_CBE 74.2931%-117 - C1 -2OLJ 3.9 ?
3 PsiBlast_PDB 73.9832%-122 - C1 -1Z47 - ? -
63 PsiBlast_CBE 73.7331%-123 - C1 -3TUI - METN_ECOLI -
4 PsiBlast_PDB 73.6131%-129 - C1 -2NQ2 - Y1470_HAEIN -
86 HHSearch 73.5629%-116 * C1 *3TUI - METN_ECOLI -
22 PsiBlast_CBE 73.5432%-124 - C1 -1Z47 - ? -
37 PsiBlast_CBE 73.1231%-117 - C1 -2OUK - ? -
41 PsiBlast_CBE 73.0231%-116 - C1 -2OLK 4.0 ?
8 PsiBlast_PDB 72.8929%-117 - C1 -1VCI - ? -
7 PsiBlast_PDB 72.6729%-116 - C1 -1V43 - ? -
39 PsiBlast_CBE 72.3331%-116 - C1 -2OLK 4.2 ?
40 PsiBlast_CBE 72.1531%-119 - C1 -2OLK 3.9 ?
31 PsiBlast_CBE 71.8731%-115 - C1 -3C4J 4.4 ?
30 PsiBlast_CBE 71.6331%-122 - C1 -3C4J 3.3 ?
71 PsiBlast_CBE 71.5632%-107 - C1 -1B0U 3.9 HISP_SALTY
38 PsiBlast_CBE 71.5031%-116 - C1 -2OLK 4.1 ?
32 PsiBlast_CBE 71.0831%-117 - C1 -2Q0H 3.8 ?
33 PsiBlast_CBE 71.0431%-115 - C1 -2Q0H 3.2 ?
20 PsiBlast_PDB 70.7731%-114 - C1 -3C41 4.8 ?
42 PsiBlast_CBE 70.7631%-116 - C1 -2OLJ 3.5 ?
29 PsiBlast_CBE 69.5031%-119 - C1 -3C41 3.6 ?
70 PsiBlast_CBE 61.1233%-124 - C1 -4HLU 5.5 ECFA1_THEMA