@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2456: (2016-04-03 )
MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGELKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVSAEGEKFEDPIELVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGADHPKNIKFVTMTLYNPSIDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETEKYPHVTFFMNGGRNEEFPGENRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETMSTPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLIQK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2PG_A_4(1EQJ)
GPMI_GEOSE
[Raw transfer]



2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]



3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]



2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]



3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]



3PG_B_5(3IGY)
?
[Raw transfer]



2PG_A_4(4QAX)
?
[Raw transfer]



2PG_A_2(4NWX)
?
[Raw transfer]



3PG_A_4(4NWJ)
?
[Raw transfer]
46 Fugue 97.2467% -77 - C4 -1EJJ 6.4 GPMI_GEOSE
2 PsiBlast_PDB 96.2367% -75 - C4 -1EQJ 5.7 GPMI_GEOSE
26 HHSearch 96.1968% -77 * C4 *1O98 6.2 GPMI_GEOSE
1 PsiBlast_PDB 96.0267% -76 - C4 -1EJJ 6.4 GPMI_GEOSE
3 PsiBlast_PDB 95.8767% -77 - C4 -1O98 6.2 GPMI_GEOSE
5 PsiBlast_PDB 93.7862% -81 - C4 -2IFY - GPMI_BACAN -
8 PsiBlast_PDB 93.5762% -83 - C4 -4NWX 4.1 ?
7 PsiBlast_PDB 93.2862% -82 - C4 -4NWJ 4.1 ?
6 PsiBlast_PDB 92.9162% -82 - C4 -4MY4 - ? -
9 PsiBlast_PDB 92.5162% -80 - C4 -4QAX 3.2 ?
4 PsiBlast_PDB 88.0267% -20 - C- -1O99 - GPMI_GEOSE -
12 PsiBlast_PDB 79.7934% -64 - C4 -3IGZ - ? -
11 PsiBlast_PDB 79.5734% -66 - C4 -3IGY 6.1 ?
27 HHSearch 79.0135% -62 - C4 -3IGZ - ? -
21 PsiBlast_CBE 78.3535% -71 - C4 -3NVL - ? -
10 PsiBlast_PDB 78.0635% -70 - C4 -3NVL - ? -
32 HHSearch 37.1924% -33 - C4 -3OT9 - DEOB_BACCR -
37 HHSearch 36.4222% -32 - C4 -3M7V - DEOB_STRMU -
53 Fugue 35.3617% -20 - C1 -4IA6 - ? -
28 HHSearch 34.2821% -40 - C4 -3ED4 - ? -