@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2459: (2016-04-03 )
MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEVHDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_A_3(3CPS)
?
[Raw transfer]



NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]



NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]
41 PsiBlast_CBE 98.7574% -96 - C1 -3LC1 - G3P1_STAAR -
40 PsiBlast_CBE 98.2774% -97 - C1 -3LC1 - G3P1_STAAR -
120 HHSearch 98.0375% -94 - C1 -3LVF - G3P1_STAAR -
35 PsiBlast_CBE 97.7474% -96 - C1 -3LVF - G3P1_STAAR -
45 PsiBlast_CBE 97.6274% -97 - C1 -3HQ4 - G3P1_STAAR -
7 PsiBlast_PDB 97.6174% -93 - C1 -3LC1 - G3P1_STAAR -
4 PsiBlast_PDB 97.6174% -94 - C1 -3LVF - G3P1_STAAR -
46 PsiBlast_CBE 97.5274% -95 - C1 -3HQ4 - G3P1_STAAR -
44 PsiBlast_CBE 97.3374% -96 - C1 -3KV3 - G3P1_STAAR -
37 PsiBlast_CBE 97.3374% -95 - C1 -3LVF - G3P1_STAAR -
43 PsiBlast_CBE 97.1374% -95 - C1 -3KV3 - G3P1_STAAR -
51 PsiBlast_CBE 97.0974% -95 - C1 -3K9Q - G3P1_STAAR -
21 PsiBlast_CBE 97.0574% -93 - C1 -3LC2 - G3P1_STAAR -
56 PsiBlast_CBE 96.9273% -94 - C1 -3KSZ - G3P1_STAAR -
52 PsiBlast_CBE 96.8774% -95 - C1 -3K9Q - G3P1_STAAR -
36 PsiBlast_CBE 96.6774% -95 - C1 -3LVF - G3P1_STAAR -
31 PsiBlast_CBE 96.6674% -93 - C1 -3VAZ - G3P1_STAAR -
28 PsiBlast_CBE 96.5374% -92 - C1 -3K73 - G3P1_STAAR -
2 PsiBlast_PDB 96.5374% -93 - C1 -3L6O - G3P1_STAAR -
53 PsiBlast_CBE 96.5274% -95 - C1 -3K9Q - G3P1_STAAR -
113 HHSearch 85.2649% -86 - C1 -1RM4 8.2 G3PA_SPIOL
121 HHSearch 84.9555% -83 - C1 -2EP7 9.1 G3P_AQUAE
116 HHSearch 84.3856% -86 - C1 -1HDG 9.1 G3P_THEMA
122 HHSearch 83.7948% -89 - C1 -3PYM 8.5 G3P3_YEAST
17 PsiBlast_PDB 82.7754% -85 - C1 -1HDG 9.1 G3P_THEMA
117 HHSearch 82.5549% -89 - C1 -3CPS 9.4 ?
72 PsiBlast_CBE 81.9154% -85 - C1 -1HDG 9.4 G3P_THEMA
124 HHSearch 79.0043% -84 - C1 -3H9E 9.2 G3PT_HUMAN