Atome 2 Filter

@TOME V2.3
(Nov 2016)

Ref. - - Doc.

Global output mode :

Sort entries by :

Sequence Color type :

Show alignment :

Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling

Templates Information:

Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]

Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2476: (2016-04-04 )
VIFIEVMKERFGEFEGETVWKWTMINDHDMRMSVLNYGAIVTSLETKDKFGDFANISLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNEGSNHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGKIDAKMTYTLNNKNEWLVDYEARSNQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPIGEKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHTFILKHENGRPDAVLFDPKSGRRLEMETKADSVLIYTANSLDGSFEIDERAVPKYAGITMETQGLVDAINHEGFGDIVLRPEKPFTSRTAFRFTVES

Atome Classification :

(42 SA)

Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)

(Atome)

(Ident)

(Tito)

(Num)

(pKd)

(Uniprot)

GLA_A_3(1NSU)
?
[Raw transfer]

GLA_B_4(1NS8)
?
[Raw transfer]

GLA_B_4(1NSU)
?
[Raw transfer]

GLA_A_3(1L7K)
?
[Raw transfer]

GLA_B_4(1L7K)
?
[Raw transfer]

GLA_B_4(1NS0)
?
[Raw transfer]

GAL_A_3(1NSX)
?
[Raw transfer]

GAL_B_4(1NSX)
?
[Raw transfer]

GAL_A_3(1NSX)
?
[Raw transfer]

XYS_A_3(1MN0)
?
[Raw transfer]

GLC_A_3(1NSZ)
?
[Raw transfer]

GLC_B_4(1NSZ)
?
[Raw transfer]

GAL_B_4(1NS2)
?
[Raw transfer]

FUC_A_3(1MMX)
?
[Raw transfer]

ARB_B_4(1MMZ)
?
[Raw transfer]

BGC_B_4(1NS7)
?
[Raw transfer]

BGC_B_5(1MMU)
?
[Raw transfer]

FUC_B_4(1MMX)
?
[Raw transfer]

ARB_A_3(1MMZ)
?
[Raw transfer]

BGC_A_3(1NSS)
?
[Raw transfer]

BGC_A_3(1MMU)
?
[Raw transfer]

BGC_B_4(1NSS)
?
[Raw transfer]

XYS_B_4(1MN0)
?
[Raw transfer]

BGC_B_5(1NSV)
?
[Raw transfer]

GAL_A_3(1NSM)
?
[Raw transfer]

G6D_A_3(1MMY)
?
[Raw transfer]

GOL_A_8(3IMH)
?
[Raw transfer]

GOL_A_8(3IMH)
?
[Raw transfer]

BGC_A_3(1NSV)
?
[Raw transfer]

GOL_B_15(3IMH)
?
[Raw transfer]

G6D_B_4(1MMY)
?
[Raw transfer]

22

PsiBlast_CBE

94.61

38%

- C2 -

-

-

23

PsiBlast_CBE

93.81

38%

- C2 -

-

-

1

PsiBlast_PDB

93.49

38%

- C2 -

-

-

81

HHSearch

93.30

38%

- C2 -

-

-

2

PsiBlast_PDB

92.55

38%

- C2 -

-

-

45

PsiBlast_CBE

92.49

32%

- C2 -

?

21

PsiBlast_CBE

92.35

38%

- C2 -

-

-

79

HHSearch

92.34

31%

* C2 *

?

3

PsiBlast_PDB

91.75

34%

- C2 -

-

?

-

44

PsiBlast_CBE

91.35

32%

- C2 -

?

80

HHSearch

90.64

33%

- C2 -

?

69

Fugue

90.58

31%

- C2 -

-

?

-

43

PsiBlast_CBE

88.77

31%

- C2 -

?

19

PsiBlast_PDB

88.50

31%

- C2 -

?

13

PsiBlast_PDB

88.41

31%

- C2 -

-

?

-

14

PsiBlast_PDB

88.33

31%

- C2 -

-

?

-

33

PsiBlast_CBE

88.27

31%

- C2 -

?

5

PsiBlast_PDB

88.22

31%

- C2 -

?

30

PsiBlast_CBE

88.15

31%

- C2 -

-

?

-

20

PsiBlast_PDB

88.14

31%

- C2 -

?

18

PsiBlast_PDB

88.08

31%

- C2 -

?

41

PsiBlast_CBE

88.01

31%

- C2 -

?

40

PsiBlast_CBE

87.80

31%

- C2 -

?

8

PsiBlast_PDB

87.80

31%

- C2 -

?

34

PsiBlast_CBE

87.70

31%

- C2 -

?

7

PsiBlast_PDB

87.64

31%

- C2 -

?

31

PsiBlast_CBE

87.62

31%

- C2 -

?

27

PsiBlast_CBE

87.38

31%

- C2 -

?

39

PsiBlast_CBE

87.36

31%

- C2 -

?

10

PsiBlast_PDB

87.35

31%

- C2 -

?

38

PsiBlast_CBE

87.18

31%

- C2 -

?

6

PsiBlast_PDB

87.13

31%

- C2 -

?

35

PsiBlast_CBE

87.06

31%

- C2 -

?

36

PsiBlast_CBE

87.03

31%

- C2 -

?

29

PsiBlast_CBE

87.00

31%

- C2 -

?

26

PsiBlast_CBE

86.82

31%

- C2 -

?

25

PsiBlast_CBE

86.70

31%

- C2 -

?

37

PsiBlast_CBE

86.62

31%

- C2 -

?

17

PsiBlast_PDB

86.62

31%

- C2 -

?

28

PsiBlast_CBE

86.59

31%

- C2 -

?

24

PsiBlast_CBE

86.55

31%

- C2 -

?

9

PsiBlast_PDB

86.35

31%

- C2 -

?