@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2477: (2016-04-04 )
MGIAVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHRESIHKKAKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLDYLNNNVYGTQIVLEVMEEFDVKHIVFSSSAATYGEPERVPITEDMPTNPESTYGETKLIMEKMMKWCDKAYGMKFVALRYFNVAGAKADGSIGEDHKPESHLVPIILQVALGQREKLAIYGDDYNTPDGTCIRDYVQVEDLIDAHIRALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPAEVVPRRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_B_7(1EK6)
GALE_HUMAN
[Raw transfer]




NAD_A_2(4WOK)
?
[Raw transfer]




NAI_A_5(1EK6)
GALE_HUMAN
[Raw transfer]




NAD_A_5(2P5U)
?
[Raw transfer]




NAD_A_2(3KO8)
?
[Raw transfer]




NAD_B_5(4ZRN)
?
[Raw transfer]




NAD_A_8(1I3N)
GALE_HUMAN
[Raw transfer]




NAD_A_5(4LIS)
?
[Raw transfer]




NAD_A_2(4TWR)
?
[Raw transfer]




NAD_A_3(4ZRM)
?
[Raw transfer]




NAD_A_3(3ENK)
?
[Raw transfer]




NAD_A_5(1UDA)
GALE_ECOLI
[Raw transfer]




NAD_A_8(1I3M)
GALE_HUMAN
[Raw transfer]




NAD_A_2(3KO8)
?
[Raw transfer]




NAI_A_5(1EK6)
GALE_HUMAN
[Raw transfer]




NAD_A_8(1I3K)
GALE_HUMAN
[Raw transfer]




NAD_A_5(1Z45)
GAL10_YEAST
[Raw transfer]




NAD_C_16(4LIS)
?
[Raw transfer]




NAD_D_8(2P5U)
?
[Raw transfer]




NAD_B_10(1I3N)
GALE_HUMAN
[Raw transfer]




NAD_B_10(1I3K)
GALE_HUMAN
[Raw transfer]




NAD_A_5(1UDB)
GALE_ECOLI
[Raw transfer]




NAD_A_4(1XEL)
GALE_ECOLI
[Raw transfer]




NAD_A_5(1A9Z)
GALE_ECOLI
[Raw transfer]




NAD_A_6(1KVR)
GALE_ECOLI
[Raw transfer]




NAD_A_9(1I3L)
GALE_HUMAN
[Raw transfer]




NAD_A_4(1KVS)
GALE_ECOLI
[Raw transfer]




NAD_A_3(4ZRN)
?
[Raw transfer]




NAD_B_10(1I3M)
GALE_HUMAN
[Raw transfer]




NAD_A_5(1UDB)
GALE_ECOLI
[Raw transfer]




NAD_A_3(3ENK)
?
[Raw transfer]




NAD_B_11(4LIS)
?
[Raw transfer]




NAD_B_10(1I3L)
GALE_HUMAN
[Raw transfer]




NAD_A_7(1HZJ)
GALE_HUMAN
[Raw transfer]




NAD_A_5(1KVU)
GALE_ECOLI
[Raw transfer]




NAD_A_5(1Z45)
GAL10_YEAST
[Raw transfer]




NAD_B_6(4ZRM)
?
[Raw transfer]




NAD_A_3(1KVT)
GALE_ECOLI
[Raw transfer]




NAD_B_5(3ENK)
?
[Raw transfer]




NAD_A_6(1A9Y)
GALE_ECOLI
[Raw transfer]




NAD_A_5(1UDC)
GALE_ECOLI
[Raw transfer]




NAD_B_9(1HZJ)
GALE_HUMAN
[Raw transfer]




NAD_A_2(2P5Y)
?
[Raw transfer]




NAD_A_4(1KVQ)
GALE_ECOLI
[Raw transfer]




NAD_A_4(1LRJ)
GALE_ECOLI
[Raw transfer]




NAD_A_2(3ICP)
?
[Raw transfer]




NAD_B_6(2P5U)
?
[Raw transfer]




NAD_A_4(1LRL)
GALE_ECOLI
[Raw transfer]




NAD_C_7(2P5U)
?
[Raw transfer]




NAD_B_6(2UDP)
GALE_ECOLI
[Raw transfer]




NAD_A_4(1NAI)
GALE_ECOLI
[Raw transfer]




NAD_A_4(1NAH)
GALE_ECOLI
[Raw transfer]




NAD_C_3(1EK5)
GALE_HUMAN
[Raw transfer]




NAD_A_4(1LRK)
GALE_ECOLI
[Raw transfer]




NAD_A_4(2UDP)
GALE_ECOLI
[Raw transfer]




GUD_A_4(3ENK)
?
[Raw transfer]




GDU_A_3(1I3L)
GALE_HUMAN
[Raw transfer]




EDO_A_8(1UDA)
GALE_ECOLI
[Raw transfer]




EDO_A_10(1UDC)
GALE_ECOLI
[Raw transfer]




23 PsiBlast_CBE 95.2062%-108 - C1 -2C20 - ? -
25 PsiBlast_CBE 93.7562%-105 - C1 -2C20 - ? -
65 HHSearch 93.4562%-105 - C1 -2C20 - ? -
1 PsiBlast_PDB 93.4062%-106 - C1 -2C20 - ? -
24 PsiBlast_CBE 92.4362%-106 - C1 -2C20 - ? -
21 PsiBlast_CBE 92.0062%-101 - C1 -2C20 - ? -
22 PsiBlast_CBE 91.6562%-106 - C1 -2C20 - ? -
82 HHSearch 81.2847% -96 - C1 -1GY8 - ? -
71 HHSearch 80.4042% -95 * C1 *3ENK 12.1 ?
5 PsiBlast_PDB 80.2142%-100 - C1 -2CNB - ? -
74 HHSearch 79.8341% -93 - C1 -1UDB 11.2 GALE_ECOLI
29 PsiBlast_CBE 79.7242%-102 - C1 -1GY8 - ? -
15 PsiBlast_PDB 79.5141% -94 - C1 -1I3L 11.7 GALE_HUMAN
8 PsiBlast_PDB 79.4741% -99 - C1 -1EK5 10.5 GALE_HUMAN
50 PsiBlast_CBE 79.2841% -93 - C1 -4LIS 10.0 ?
35 PsiBlast_CBE 79.1641% -95 - C1 -1I3L 11.7 GALE_HUMAN
36 PsiBlast_CBE 78.9841% -94 - C1 -1I3K 11.8 GALE_HUMAN
16 PsiBlast_PDB 78.8141% -94 - C1 -1I3M 11.6 GALE_HUMAN
14 PsiBlast_PDB 78.8041% -95 - C1 -1I3K 11.5 GALE_HUMAN
17 PsiBlast_PDB 78.6941% -94 - C1 -1I3N 11.8 GALE_HUMAN
51 PsiBlast_CBE 78.1541% -92 - C1 -4LIS 10.1 ?
30 PsiBlast_CBE 78.0641% -91 - C1 -1HZJ 10.6 GALE_HUMAN
3 PsiBlast_PDB 77.8248% -92 - C1 -4WOK 13.0 ?
49 PsiBlast_CBE 77.7541% -92 - C1 -4LIS 10.5 ?
45 PsiBlast_CBE 77.6141% -94 - C1 -3ENK 11.9 ?
2 PsiBlast_PDB 77.5948% -91 - C1 -4TWR 13.1 ?
33 PsiBlast_CBE 77.3541% -92 - C1 -1I3N 11.1 GALE_HUMAN
11 PsiBlast_PDB 77.2940% -90 - C1 -1UDC 11.4 GALE_ECOLI
12 PsiBlast_PDB 77.2340% -95 - C1 -1LRK 11.6 GALE_ECOLI
34 PsiBlast_CBE 77.2241% -92 - C1 -1I3M 11.0 GALE_HUMAN
39 PsiBlast_CBE 77.1540% -91 - C1 -1UDA 11.3 GALE_ECOLI
9 PsiBlast_PDB 77.0441% -95 - C1 -1EK6 12.1 GALE_HUMAN
32 PsiBlast_CBE 77.0040% -89 - C1 -2UDP 11.2 GALE_ECOLI
38 PsiBlast_CBE 76.9840% -90 - C1 -1UDB 11.2 GALE_ECOLI
7 PsiBlast_PDB 76.9341% -92 - C1 -1HZJ 11.5 GALE_HUMAN
31 PsiBlast_CBE 76.8341% -90 - C1 -1EK6 11.5 GALE_HUMAN
13 PsiBlast_PDB 76.7940% -92 - C1 -1LRL 10.8 GALE_ECOLI
19 PsiBlast_PDB 76.6540% -89 - C1 -1NAH 11.4 GALE_ECOLI
37 PsiBlast_CBE 76.4140% -92 - C1 -1XEL 11.3 GALE_ECOLI
43 PsiBlast_CBE 76.3340% -90 - C1 -1KVQ 10.7 GALE_ECOLI
46 PsiBlast_CBE 76.2541% -92 - C1 -3ENK 12.1 ?
69 HHSearch 75.7843% -92 - C1 -1EK6 12.0 GALE_HUMAN
10 PsiBlast_PDB 75.7540% -88 - C1 -2UDP 11.5 GALE_ECOLI
88 Fugue 75.5144% -90 - C1 -1Z45 12.3 GAL10_YEAST
41 PsiBlast_CBE 75.4940% -88 - C1 -1KVU 10.2 GALE_ECOLI
42 PsiBlast_CBE 75.4140% -90 - C1 -1KVS 9.5 GALE_ECOLI
44 PsiBlast_CBE 75.3239% -88 - C1 -1A9Y 10.4 GALE_ECOLI
20 PsiBlast_PDB 75.3040% -89 - C1 -1NAI 11.0 GALE_ECOLI
40 PsiBlast_CBE 75.2740% -89 - C1 -1KVR 11.2 GALE_ECOLI
47 PsiBlast_CBE 75.1640% -91 - C1 -1KVT 10.5 GALE_ECOLI
6 PsiBlast_PDB 75.1643% -92 - C1 -1Z45 12.3 GAL10_YEAST
18 PsiBlast_PDB 75.1540% -88 - C1 -1LRJ 10.6 GALE_ECOLI
48 PsiBlast_CBE 74.4139% -90 - C1 -1A9Z 10.6 GALE_ECOLI
75 HHSearch 62.0631% -95 - C1 -3KO8 12.7 ?
52 PsiBlast_CBE 61.8635% -89 - C1 -4ZRN 12.8 ?
54 PsiBlast_CBE 61.0035% -88 - C1 -4ZRM 12.9 ?
55 PsiBlast_CBE 60.2935% -85 - C1 -4ZRM 13.0 ?
53 PsiBlast_CBE 59.8335% -89 - C1 -4ZRN 12.6 ?
59 PsiBlast_CBE 58.6635% -89 - C1 -2P5U 12.1 ?
56 PsiBlast_CBE 57.9035% -84 - C1 -2P5Y 12.7 ?
58 PsiBlast_CBE 55.7135% -83 - C1 -2P5U 12.5 ?
57 PsiBlast_CBE 54.1535% -81 - C1 -2P5U 12.3 ?
61 PsiBlast_CBE 51.8631% -83 - C1 -3KO8 12.4 ?
60 PsiBlast_CBE 51.2135% -81 - C1 -2P5U 11.2 ?
62 PsiBlast_CBE 48.5931% -78 - C1 -3ICP 12.0 ?