@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2489: (2016-04-04 )
LKDKFELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRHSATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIFPASHFVTRPDIMKKAIVNIKAELEDRLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVIEQIIRPTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKAEG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FLQ_C_5(2FDC)
UVRB_BACCA
[Raw transfer]



NACID_C_1(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_2(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_1(2NMV)
?
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
CHAIN_C_3(3V4R)
?
[Raw transfer]
-
CHAIN_D_4(3V4R)
UVRB_BACSU
[Raw transfer]
-
43 HHSearch 91.3280% -94 - C3 -2D7D 8.8 UVRB_BACSU
1 PsiBlast_PDB 91.0679% -94 - C3 -2D7D 8.8 UVRB_BACSU
2 PsiBlast_PDB 90.0879% -95 - C3 -2NMV 7.6 ?
23 PsiBlast_CBE 88.9477% -93 - C3 -1T5L - UVRB_BACCA -
6 PsiBlast_PDB 88.8577% -93 - C3 -1T5L - UVRB_BACCA -
5 PsiBlast_PDB 88.5877% -92 - C3 -3UWX - ? -
3 PsiBlast_PDB 87.4879% -95 - C3 -3V4R 10.8 UVRB_BACSU
21 PsiBlast_CBE 86.6379% -93 - C3 -3V4R 13.4 ?
22 PsiBlast_CBE 86.6277% -92 - C3 -2FDC 18.2 UVRB_BACCA
34 Fugue 84.1979% -85 - C3 -1D9X - UVRB_BACCA -
8 PsiBlast_PDB 83.3077% -81 - C3 -1D9X - UVRB_BACCA -
7 PsiBlast_PDB 82.8777% -79 - C3 -1D9Z - UVRB_BACCA -
33 Fugue 78.2057% -83 - C3 -1D2M - UVRB_THET8 -
4 PsiBlast_PDB 78.0377% -87 - C3 -2FDC 12.3 UVRB_BACCA
35 Fugue 64.4376% -82 - C3 -1D9X - UVRB_BACCA -
39 Fugue 50.6420% -58 - C3 -2EYQ - MFD_ECOLI -
38 Fugue 46.0719% -50 - C3 -3HJH - MFD_ECOLI -
45 HHSearch 44.9518% -70 - C3 -3HJH - MFD_ECOLI -
36 Fugue 41.8768% -45 - C3 -1D9X - UVRB_BACCA -
47 HHSearch 41.8184% -96 - C3 -3FPN - ? -