@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2510: (2016-04-04 )
MAGLLKKIFESGKKDVKYLERKADEIIALADETAALSDDALREKTVEFKERVQKGETLDDLLVEAFAVAREGAKRALGLYPFKVQLMGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALSGEGVHVVTVNEYLAHRDAEEMGVLYNFLGLSVGLNLNALSSTEKREAYACDITYSTNNELGFDYLRDNMVVYKEEMVQRPLAFAVIDEVDSILVDEARTPLIISGEAEKSTILYVRANTFVRTLTEEEDYTVDIKTKSVQLTEDGMTKGENYFDVENLFDLENTVILHHIAQALKANYTMSLDVDYVVQDDEVLIVDQFTGRIMKGRRFSEGLHQALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEIPTNKVIIRDDRPDLIYTTIEAKFNAVVEDIAERHAKGQPVLVGTVAIETSELISSKLKRKGIKHDVLNAKQHEREADIIKHAGERGAVVIATNMAGRGTDIKLGEGTIEAGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVTQFYLSMEDELMRRFGSDNMKSMMERFGMAEDAIQSKMVSRAVESAQRRVEGNNFDSRKQVLQYDDVLRQQREVIYKQRYEVINAENSLREIIEQMIQRTVNFIVSSNASSHEPEEAWNLQGIIDYVDANLLPEGTITLEDLQNRTSEDIQNLILDKIKAAYDEKETLLPPEEFNEFEKVVLLRVVDTKWVDHIDAMDHLRDGIHLRAYGQIDPLREYQSEGFEMFEAMVSSIDEDVARYIMKAEIRQNLEREQVAKGEAINPAEGKPEAKRQPIRKDQHIGRNDPCPCGSGKKYKNCHGKEA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_8(1M74)
SECA_BACSU
[Raw transfer]



ADP_A_3(1TF2)
SECA_BACSU
[Raw transfer]



ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_3(3JUX)
SECA_THEMA
[Raw transfer]



ADP_B_8(3BXZ)
SECA_ECOLI
[Raw transfer]



ADP_A_7(3BXZ)
SECA_ECOLI
[Raw transfer]
52 Fugue 90.9168% -63 - C4 -1M6N - SECA_BACSU -
4 PsiBlast_PDB 90.8068% -64 - C4 -1M6N - SECA_BACSU -
5 PsiBlast_PDB 90.3868% -60 - C4 -1M74 5.3 SECA_BACSU
3 PsiBlast_PDB 90.2867% -62 - C4 -3IQY - SECA_BACSU -
6 PsiBlast_PDB 90.0968% -63 - C4 -3IQM - SECA_BACSU -
2 PsiBlast_PDB 89.1267% -74 - C4 -1TF5 - SECA_BACSU -
32 HHSearch 88.8467% -71 - C4 -1TF5 - SECA_BACSU -
1 PsiBlast_PDB 88.7467% -72 - C4 -1TF2 5.4 SECA_BACSU
21 PsiBlast_CBE 88.0768% -70 - C4 -3JV2 - SECA_BACSU -
8 PsiBlast_PDB 87.9568% -67 - C4 -3JV2 - SECA_BACSU -
7 PsiBlast_PDB 85.8168% -56 - C4 -2IBM - SECA_BACSU -
23 PsiBlast_CBE 84.3847% -68 - C4 -1NKT - SECA1_MYCTU -
15 PsiBlast_PDB 84.1347% -68 - C4 -1NKT - SECA1_MYCTU -
53 Fugue 84.0051% -54 - C4 -2IPC - SECA_THET8 -
34 HHSearch 83.7449% -63 - C4 -1NKT - SECA1_MYCTU -
31 HHSearch 83.6451% -52 - C4 -2IPC - SECA_THET8 -
18 PsiBlast_PDB 82.9644% -69 - C4 -4YS0 6.3 SECA_THEMA
19 PsiBlast_PDB 81.7744% -66 - C4 -3JUX 5.5 SECA_THEMA
13 PsiBlast_PDB 81.2050% -62 - C4 -2VDA - SECA_ECOLI -
22 PsiBlast_CBE 78.9149% -67 - C4 -2FSI - SECA_ECOLI -
25 PsiBlast_CBE 44.8953% -30 - C4 -3BXZ 2.8 SECA_ECOLI
26 PsiBlast_CBE 44.7553% -27 - C4 -3BXZ 2.0 SECA_ECOLI