@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2526: (2016-04-04 )
LEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLKYLNADVSFVNDEVTVDATGEITSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIENGYIEATAEKLVGAKVYLDFPSVGATQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMGARVIGAGTEVIRIEGVKELTATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHISSLIAKLEEMGVQIIEEENGIRVIGPDKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMHVEEMRRMNADMKIEGHSVIISGPAKLQGAEVAATDLRAAAALILAGLVADGYTQVTELKYLDRGYNNFHGKLQALGADVERVDDSKVDVTNLASLF

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TET_D_4(1A2N)
MURA_ECOLI
[Raw transfer]



UD1_A_6(2RL2)
MURA_HAEIN
[Raw transfer]



UD1_D_4(1UAE)
MURA_ECOLI
[Raw transfer]



EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]



EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]



FLC_A_2(3ZH4)
?
[Raw transfer]



FCN_G_7(1UAE)
MURA_ECOLI
[Raw transfer]



PEG_A_3(3ZH4)
?
[Raw transfer]



FLC_A_2(3ZH4)
?
[Raw transfer]



GG6_A_5(2RL2)
MURA_HAEIN
[Raw transfer]
32 HHSearch 99.84100%-118 - C6 -3R38 - MURA1_LISMO -
1 PsiBlast_PDB 99.2599%-117 - C6 -3R38 - MURA1_LISMO -
2 PsiBlast_PDB 88.1274%-110 - C6 -3SG1 - MURA1_BACAN -
21 PsiBlast_CBE 87.9574%-111 - C6 -3SG1 - MURA1_BACAN -
31 PsiBlast_CBE 79.5449%-109 - C6 -4R7U - MURA_VIBCH -
10 PsiBlast_PDB 79.1249%-108 - C6 -4R7U - MURA_VIBCH -
9 PsiBlast_PDB 78.9350% -99 - C6 -1UAE 7.7 MURA_ECOLI
29 PsiBlast_CBE 78.9149%-108 - C6 -4R7U - MURA_VIBCH -
23 PsiBlast_CBE 78.8049%-107 - C6 -3VCY - MURA_VIBFM -
5 PsiBlast_PDB 78.2149%-108 - C6 -3VCY - MURA_VIBFM -
8 PsiBlast_PDB 78.1949%-108 - C6 -3SPB - MURA_ENTCC -
27 PsiBlast_CBE 77.9950%-105 - C6 -5BQ2 - ? -
24 PsiBlast_CBE 77.9149%-108 - C6 -3VCY - MURA_VIBFM -
26 PsiBlast_CBE 77.8650%-107 - C6 -5BQ2 - ? -
30 PsiBlast_CBE 77.8449%-105 - C6 -4R7U - MURA_VIBCH -
11 PsiBlast_PDB 77.6949% -99 - C6 -1A2N 9.0 MURA_ECOLI
6 PsiBlast_PDB 77.6650%-107 - C6 -5BQ2 - ? -
7 PsiBlast_PDB 77.6350%-105 - C6 -1NAW - MURA_ENTCC -
28 PsiBlast_CBE 77.6150%-107 - C6 -5BQ2 - ? -
25 PsiBlast_CBE 77.2550%-107 - C6 -1NAW - MURA_ENTCC -
4 PsiBlast_PDB 75.7149% -98 - C6 -2RL2 5.2 MURA_HAEIN
14 PsiBlast_PDB 74.4641%-102 - C6 -2YVW 7.0 MURA_AQUAE
40 HHSearch 74.1241%-104 - C6 -2YVW 6.5 MURA_AQUAE
13 PsiBlast_PDB 70.4843% -99 - C6 -3ZH4 4.1 ?
33 HHSearch 70.1944% -97 - C6 -3ZH4 3.4 ?