@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2529: (2016-04-04 )
MSKGQVIQVMGPVVDVKFEGGNLPEIYNALVIEYKSDAEEAPTSQLTLEVAIQLGDDVVRTIAMASTDGVQRGMEVIDTGSPITVPVGTVTLGRVFNVLGNTIDLDEPLPSDIKRNKIHREAPTFDQLATTTEILETGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYFEMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLTEQGIYPAVDPLASTSRALSPDIVGEEHYAVATEVQRLLQRYKELQDIIAILGMDELSDEDKQSVSRARRVQFFLSQNFHVAEQFTGQKGSYVPVKETVKGFKDLLAGKYDHIPEDAFRSVGRIEDVLEKAKDMGVEV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

QUE_N_(2JJ2)
ATPB_BOVIN
[Raw transfer]




1 PsiBlast_PDB 98.4282% -85 - C7 -1SKY - ATPB_BACP3 -
133 Fugue 97.9782% -86 - C7 -1SKY - ATPB_BACP3 -
112 HHSearch 96.9382% -84 - C7 -1SKY - ATPB_BACP3 -
102 PsiBlast_CBE 93.8768% -90 * C7 *2XOK - ATPB_YEAST -
63 PsiBlast_CBE 93.2866% -85 - C7 -1W0K - ATPB_BOVIN -
3 PsiBlast_PDB 93.2875% -77 - C7 -2QE7 - ? -
105 PsiBlast_CBE 93.1968% -90 - C7 -3ZRY - ATPB_YEAST -
45 PsiBlast_CBE 93.1566% -86 - C7 -2JJ1 - ATPB_BOVIN -
90 PsiBlast_CBE 92.9466% -85 - C7 -4TSF - ATPB_BOVIN -
19 PsiBlast_PDB 92.9066% -82 - C7 -1E1R - ATPB_BOVIN -
21 PsiBlast_CBE 92.8981% -76 - C7 -4XD7 - ? -
40 PsiBlast_CBE 92.8366% -82 - C7 -2JJ2 - ATPB_BOVIN -
18 PsiBlast_PDB 92.8266% -83 - C7 -1E1Q - ATPB_BOVIN -
7 PsiBlast_PDB 92.7967% -85 - C7 -4B2Q - ATPB_YEAST -
25 PsiBlast_CBE 92.7066% -81 - C7 -4YXW - ATPB_BOVIN -
22 PsiBlast_CBE 92.6866% -84 - C7 -4Z1M - ATPB_BOVIN -
34 PsiBlast_CBE 92.6666% -83 - C7 -2V7Q - ATPB_BOVIN -
64 PsiBlast_CBE 92.6166% -80 - C7 -1W0J - ATPB_BOVIN -
55 PsiBlast_CBE 92.5966% -83 - C7 -2JDI - ATPB_BOVIN -
52 PsiBlast_CBE 92.5566% -84 - C7 -2JIZ - ATPB_BOVIN -
37 PsiBlast_CBE 92.0966% -80 - C7 -2JJ2 3.2 ATPB_BOVIN