@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2539: (2016-04-04 )
MVYLQKQDKEVFDAIKLELGRQRANIELIASENFVSEQVMEAMGSVLTNKYAEGYPGKRYYGGCEFVDIVEDLARDRAKKLFGAEYANVQPHSGAQANMAVYHTVLEPGDTVLGMNLSHGGHLTHGSPVNFSGVLYNFVEYGVREDTKEIDYDIVREAALKHKPKMIVAGASAYPRKIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHQNPVPYADFTTTTTHKTLRGPRGGMILAKAEWEQKLNKSIFPGIQGGPLMHVIAAKAVAFGEALQPEFTTYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLHNLENEEVLADVKARVATLTNEYPLYPSL

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]




PLG_A_3(4WXF)
GLYA_STRT1
[Raw transfer]




FON_H_8(1KL2)
?
[Raw transfer]




ALO_A_3(2W7G)
?
[Raw transfer]




PLG_A_4(1RVY)
GLYC_RABIT
[Raw transfer]




GLY_A_2(2VMS)
?
[Raw transfer]




PLP_A_3(2W7K)
?
[Raw transfer]




PLP_A_3(2VMO)
?
[Raw transfer]




PLP_A_3(2VMT)
?
[Raw transfer]




PLP_A_3(2VGU)
?
[Raw transfer]




PLP_A_2(2W7L)
?
[Raw transfer]




PLP_A_3(2VIB)
?
[Raw transfer]




PLP_A_3(2VGV)
?
[Raw transfer]




PLP_A_3(2W7M)
?
[Raw transfer]




PLP_A_2(2W7G)
?
[Raw transfer]




GLY_A_2(2VMQ)
?
[Raw transfer]




PLP_C_3(1KL1)
?
[Raw transfer]




PLP_A_3(2W7J)
?
[Raw transfer]




PLP_A_3(2VGT)
?
[Raw transfer]




PLP_A_2(2VMX)
?
[Raw transfer]




PLP_A_3(2VMW)
?
[Raw transfer]




PLP_C_3(1YJZ)
?
[Raw transfer]




PLP_A_3(2VMU)
?
[Raw transfer]




PLP_A_3(2VIA)
?
[Raw transfer]




PLP_C_3(1YJS)
?
[Raw transfer]




PLP_A_3(2VI9)
?
[Raw transfer]




PLP_A_3(2VMP)
?
[Raw transfer]




PLP_A_3(2VMQ)
?
[Raw transfer]




PLP_C_3(1KKP)
?
[Raw transfer]




GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]




GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_B_9(1RVU)
GLYC_RABIT
[Raw transfer]




PLP_A_9(1RV4)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VGS)
?
[Raw transfer]




PLP_A_3(1KKJ)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2W7D)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_3(2VMZ)
?
[Raw transfer]




PLP_B_4(1CJ0)
GLYC_RABIT
[Raw transfer]




PLP_A_3(2VMS)
?
[Raw transfer]




PLP_A_3(2W7H)
?
[Raw transfer]




PLP_A_3(2W7F)
?
[Raw transfer]




PLP_A_3(2W7E)
?
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_2(2VMR)
?
[Raw transfer]




ALO_A_3(2W7L)
?
[Raw transfer]




PLP_A_2(2W7I)
?
[Raw transfer]




PLP_A_7(1RVU)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_2(2VMV)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_B_7(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_3(1CJ0)
GLYC_RABIT
[Raw transfer]




PLP_B_11(1RV4)
GLYC_RABIT
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_B_5(1RVY)
GLYC_RABIT
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




PLP_A_3(2VGW)
?
[Raw transfer]




FFO_B_8(2VMY)
?
[Raw transfer]




FON_G_7(1KL2)
?
[Raw transfer]




PLP_C_3(1YJY)
?
[Raw transfer]




FFO_A_6(2VMY)
?
[Raw transfer]




PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]




15 PsiBlast_PDB 96.2972% -88 - C1 -2W7D 4.3 ?
18 PsiBlast_PDB 96.1372% -86 - C1 -2W7G 3.4 ?
35 PsiBlast_CBE 95.9972% -87 - C1 -2VMR 4.2 ?
23 PsiBlast_CBE 95.8472% -86 - C1 -2VMQ 4.0 ?
111 HHSearch 95.8172% -88 - C1 -2VI8 4.2 ?
11 PsiBlast_PDB 95.8172% -88 - C1 -2VI8 4.2 ?
33 PsiBlast_CBE 95.7872% -85 - C1 -2VMT 4.1 ?
4 PsiBlast_PDB 95.7172% -87 - C1 -1KL2 3.9 ?
38 PsiBlast_CBE 95.6972% -89 - C1 -2VMY 4.2 ?
29 PsiBlast_CBE 95.6172% -87 - C1 -2W7K 3.7 ?
12 PsiBlast_PDB 95.5572% -86 - C1 -2VIB 3.4 ?
26 PsiBlast_CBE 95.5172% -85 - C1 -2VMN 4.3 ?
21 PsiBlast_CBE 95.4572% -87 - C1 -1KL2 5.0 ?
34 PsiBlast_CBE 95.4472% -85 - C1 -2VMS 4.0 ?
30 PsiBlast_CBE 95.4472% -86 - C1 -2W7J 4.0 ?
19 PsiBlast_PDB 95.4472% -86 - C1 -2W7H 4.1 ?
16 PsiBlast_PDB 95.4372% -86 - C1 -2W7E 4.3 ?
7 PsiBlast_PDB 95.4272% -87 - C1 -2VGT 3.7 ?
14 PsiBlast_PDB 95.4072% -85 - C1 -2VI9 3.6 ?
25 PsiBlast_CBE 95.3972% -85 - C1 -2VMO 3.5 ?
31 PsiBlast_CBE 95.3672% -86 - C1 -2W7I 4.2 ?
13 PsiBlast_PDB 95.3472% -86 - C1 -2VIA 3.7 ?
24 PsiBlast_CBE 95.3372% -86 - C1 -2VMP 3.9 ?
27 PsiBlast_CBE 95.3072% -87 - C1 -2W7M 4.0 ?
41 PsiBlast_CBE 95.2972% -86 - C1 -2VMV 4.1 ?
37 PsiBlast_CBE 95.2872% -88 - C1 -2VMY 4.2 ?
36 PsiBlast_CBE 95.2072% -87 - C1 -2VMZ 4.2 ?
39 PsiBlast_CBE 95.0772% -86 - C1 -2VMX 3.8 ?
28 PsiBlast_CBE 95.0772% -86 - C1 -2W7L 4.1 ?
9 PsiBlast_PDB 95.0372% -86 - C1 -2VGW 4.0 ?
17 PsiBlast_PDB 95.0272% -85 - C1 -2W7F 3.3 ?
1 PsiBlast_PDB 94.9972% -86 - C1 -1KKJ 3.0 ?
40 PsiBlast_CBE 94.9872% -85 - C1 -2VMW 4.1 ?
32 PsiBlast_CBE 94.9672% -84 - C1 -2VMU 3.9 ?
6 PsiBlast_PDB 94.8872% -86 - C1 -2VGS 4.1 ?
3 PsiBlast_PDB 94.8872% -87 - C1 -1KL1 4.1 ?
22 PsiBlast_CBE 94.8772% -89 - C1 -1YJZ 3.8 ?
5 PsiBlast_PDB 94.6372% -88 - C1 -1YJS 4.2 ?
10 PsiBlast_PDB 94.6272% -86 - C1 -2VGU 4.0 ?
2 PsiBlast_PDB 94.5872% -85 - C1 -1KKP 4.1 ?
20 PsiBlast_PDB 94.5672% -89 - C1 -1YJY 4.1 ?
8 PsiBlast_PDB 94.0272% -88 - C1 -2VGV 4.0 ?
47 PsiBlast_CBE 87.5964% -84 - C1 -2DKJ 3.0 GLYA_THET8
60 PsiBlast_CBE 87.3860% -84 - C1 -4WXG 6.2 GLYA_STRT1
46 PsiBlast_CBE 87.3264% -86 - C1 -2DKJ 4.5 GLYA_THET8
62 PsiBlast_CBE 86.7760% -84 - C1 -4WXF 5.1 GLYA_STRT1
61 PsiBlast_CBE 86.5560% -85 - C1 -4WXG 5.7 GLYA_STRT1
117 HHSearch 85.5460% -84 * C1 *2DKJ 3.0 GLYA_THET8
63 PsiBlast_CBE 85.0060% -84 - C1 -4WXF 5.6 GLYA_STRT1
73 PsiBlast_CBE 84.7859% -86 - C1 -3G8M 4.3 GLYA_ECOLI
102 Fugue 82.7845% -85 - C1 -1BJ4 2.4 GLYC_HUMAN
112 HHSearch 80.3545% -81 - C1 -1RV3 3.5 GLYC_RABIT
81 PsiBlast_CBE 78.3540% -88 - C1 -4PVF 3.3 GLYM_HUMAN
82 PsiBlast_CBE 77.9340% -85 - C1 -4PVF 3.0 GLYM_HUMAN
92 PsiBlast_CBE 77.5645% -82 - C1 -1BJ4 2.4 GLYC_HUMAN
95 PsiBlast_CBE 76.9245% -80 - C1 -1RV3 3.4 GLYC_RABIT
83 PsiBlast_CBE 76.6345% -82 - C1 -1CJ0 4.6 GLYC_RABIT
90 PsiBlast_CBE 76.3945% -80 - C1 -1RVU 3.2 GLYC_RABIT
88 PsiBlast_CBE 76.2045% -79 - C1 -1RVY 3.6 GLYC_RABIT
89 PsiBlast_CBE 75.7045% -80 - C1 -1RVY 3.0 GLYC_RABIT
94 PsiBlast_CBE 75.1045% -80 - C1 -1RV4 3.4 GLYC_RABIT
91 PsiBlast_CBE 75.0245% -80 - C1 -1RVU 3.2 GLYC_RABIT
96 PsiBlast_CBE 74.9445% -80 - C1 -1RV3 3.5 GLYC_RABIT
93 PsiBlast_CBE 74.8245% -80 - C1 -1RV4 3.6 GLYC_RABIT
84 PsiBlast_CBE 74.5745% -83 - C1 -1CJ0 3.9 GLYC_RABIT