@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2541: (2016-04-04 )
MQTIHWNINKQQSNQAIFQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDQFVASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIGTANIPIAAPSANRSGKPSPTTASHVIEDLDGKIAGIIDGGATGVGLESTVIDCSLEIPIILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTQFWQSEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFDHADVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TXA_A_3(4E1B)
SUA5_SULTO
[Raw transfer]




ANP_A_3(3AJE)
SUA5_SULTO
[Raw transfer]




AMP_A_3(2EQA)
SUA5_SULTO
[Raw transfer]




AMP_A_3(2EQA)
SUA5_SULTO
[Raw transfer]




21 HHSearch 99.6142%-101 * C5 *2EQA 5.2 SUA5_SULTO
1 PsiBlast_PDB 97.1843% -97 - C5 -3AJE 6.1 SUA5_SULTO
3 PsiBlast_PDB 96.5042%-101 - C5 -4E1B 9.3 SUA5_SULTO
2 PsiBlast_PDB 94.5542%-102 - C5 -2EQA 5.2 SUA5_SULTO
22 HHSearch 68.6421% -99 - C5 -1K7J - YCIO_ECOLI -
24 HHSearch 65.4926%-105 - C5 -1HRU - TSAC_ECOLI -
6 PsiBlast_PDB 64.2522% -84 - C5 -1KK9 - YCIO_ECOLI -
32 Fugue 63.9731% -94 - C5 -1JCU - ? -
33 Fugue 63.4118% -77 - C5 -1K7J - YCIO_ECOLI -
34 Fugue 62.6825%-101 - C5 -1HRU - TSAC_ECOLI -
7 PsiBlast_PDB 62.1822% -81 - C5 -1K7J - YCIO_ECOLI -
36 Fugue 59.9219% -52 - C5 -3TTC - ? -
26 HHSearch 58.9326% -73 - C5 -3TTC - ? -
4 PsiBlast_PDB 58.3733% -80 - C5 -1JCU - ? -
25 HHSearch 58.0120% -80 - C5 -3VTH - ? -
23 HHSearch 54.0518% -87 - C5 -3L7V - ? -
10 PsiBlast_PDB 53.2226% -85 - C5 -3VTI - ? -
9 PsiBlast_PDB 52.1826% -85 - C5 -3VTH - ? -
5 PsiBlast_PDB 51.8031% -90 - C5 -1HRU - TSAC_ECOLI -
13 PsiBlast_PDB 45.2128% -70 - C5 -3TTC - ? -