@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2559: (2016-04-05 )
MTKYIFVTGGVVSSIGKGITAASLGRLLKNRGLSVTIQKFDPYINVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKVYSEVIKKERRGDYLGGTVQVIPHITNELKDRVFRAARMTNSDIIITEIGGTVGDIESLPFLEAIRQIKGDVGAENVLYIHTTLIPYIKAAGEMKTKPTQHSVKELRSLGIQPNIIVVRTEQPVSQEMKDKIALFCDIKASEVIESRDEETLYNVPLSLQKQKMDDIVLEHLQLEAPQAEMTDWKNLVHRVKNLSKKVRIGLVGKYVSLQDAYLSVAEALRHAGYDHDAEIEIDWIDSEKVTKENVAEIMKDVDGILVPGGFGDRAIEGKIAAIEYARVNKVPYFGICLGMQLATVEFARNVLGLEGAHSAEIEPETNHNIIDLLPEQKNIENMGGTLRLGLYPARIKQGTKAEAAYGTTLVEERHRHRYEFNNEYREQMEEAGMIVSATSPDGRLVEVVELIDHPWFVACQYHPEFISRPNRPQSLFKDFVGAALKNK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_4(4ZDK)
PYRG_MYCTU
[Raw transfer]



ADP_B_6(2AD5)
PYRG_ECOLI
[Raw transfer]



ACP_B_8(4ZDK)
PYRG_MYCTU
[Raw transfer]



UTP_A_3(4ZDJ)
PYRG_MYCTU
[Raw transfer]



ADP_B_5(3IHL)
PYRG2_HUMAN
[Raw transfer]
23 PsiBlast_CBE 94.9253% -83 - C5 -4ZDI - PYRG_MYCTU -
22 PsiBlast_CBE 94.8953% -82 - C5 -4ZDI - PYRG_MYCTU -
2 PsiBlast_PDB 94.7353% -78 - C5 -4ZDJ 4.7 PYRG_MYCTU
24 PsiBlast_CBE 94.6653% -81 - C5 -4ZDI - PYRG_MYCTU -
27 PsiBlast_CBE 94.6453% -81 - C5 -4ZDI - PYRG_MYCTU -
1 PsiBlast_PDB 94.6253% -82 - C5 -4ZDI - PYRG_MYCTU -
3 PsiBlast_PDB 94.5753% -79 - C5 -4ZDK 6.0 PYRG_MYCTU
25 PsiBlast_CBE 94.4753% -82 - C5 -4ZDI - PYRG_MYCTU -
28 PsiBlast_CBE 94.2153% -78 - C5 -4ZDK 4.9 PYRG_MYCTU
26 PsiBlast_CBE 94.1753% -80 - C5 -4ZDI - PYRG_MYCTU -
29 PsiBlast_CBE 94.1051% -78 - C5 -2AD5 4.9 PYRG_ECOLI
21 PsiBlast_CBE 94.0453% -81 - C5 -4ZDI - PYRG_MYCTU -
4 PsiBlast_PDB 93.7753% -78 - C5 -3NVA - PYRG_SULSO -
36 HHSearch 93.6853% -77 * C5 *3NVA - PYRG_SULSO -
67 Fugue 92.5451% -70 - C5 -1S1M - PYRG_ECOLI -
30 PsiBlast_CBE 91.7951% -75 - C5 -1S1M - PYRG_ECOLI -
5 PsiBlast_PDB 62.0740% -83 - C5 -2VKT - PYRG2_HUMAN -
6 PsiBlast_PDB 61.7740% -75 - C5 -2V4U - PYRG2_HUMAN -
41 HHSearch 60.4140% -73 - C5 -2V4U - PYRG2_HUMAN -
31 PsiBlast_CBE 56.9952% -93 - C5 -3IHL 6.1 PYRG2_HUMAN